rs108413129 SNP Detail

Summary

• ID
  rs108413129
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129087368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCATTACAG ATGTTTGTGA GCTGCTATGT GGTTGCTGGG
  AACTGAACCC AGGACCTCTG GTAGAGCAGA ACTGCTGAGC CATCTCTTCA GCCCGAGGTT
  K
  TTTTTTGTTT TGTTTTGTTT TGTTTGTTTA TTTGTTTTTC CTTTCTATAT TCGCGTAGTG
  GGTGAGTATT CATCCATCCA TTGACTACAG TGGCTGTTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147584315	ENSMUSSNP3340471	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108413129					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129087368 () rs orientation: forward

Symbol	Name	Function Class
Gm14024	predicted gene 14024	928 bp upstream
Rr373845	regulatory region 373845	494 bp upstream
Rr564889	regulatory region 564889	1852 bp distal
Rr564890	regulatory region 564890	1232 bp distal
Rr564891	regulatory region 564891	789 bp distal
Rr564892	regulatory region 564892	272 bp distal
Rr564893	regulatory region 564893	61 bp proximal
Tssr20109	transcription start site region 20109	909 bp upstream