rs108406674 SNP Detail

Summary

• ID
  rs108406674
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50544495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTCTGGTTGA GCTTGTTTAT ATTCTACCAC TTTTCCTTCC
  GCCATCAGAT TAACATGAGA TGTTAGAAGG CTGGTCTAAA GTCTCAATAG ATCTCTTTCC
  W
  GCCACTGGTC CTATCTGCTC AAAGATGTCA GTTTGTGTGA GTATAGTTGT TAGGTATTCC
  CAGGGATAGT TGATTCCAGA ACAATCCCCA GAACCCATAC A                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133182297	ENSMUSSNP549117	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108406674					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50544495 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	within coordinates
Cpgi17392	CpG island 17392	448 bp distal
Cycs	cytochrome c, somatic	977 bp upstream
Rr630033	regulatory region 630033	988 bp distal
Rr630034	regulatory region 630034	753 bp distal
Rr630035	regulatory region 630035	936 bp distal
Rr630036	regulatory region 630036	within coordinates
Rr630037	regulatory region 630037	425 bp distal
Tssr56423	transcription start site region 56423	765 bp downstream
Tssr60918	transcription start site region 60918	957 bp upstream
Tssr60919	transcription start site region 60919	938 bp upstream