rs108361163 SNP Detail

Summary

• ID
  rs108361163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50544205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCACAAGT GGCAGACAGG
  ATCACATCTT ACCCAGAGTC CCTGTTTTCT TCCCCTAGTG TTTGTAGAAA ACGAGGAGGG
  TGTGCAGGCA AGCTTTAAGG GAGAAGCAGG ATTCGCCTGA GTAGAGGATT CCCGGGAATC
  CGCTAGACTT GGCATCCCTT CTGACCATAT TGGAAATGGA AGTCTCCTTA GCATACTTTC
  Y
  TGGTGTACTT CAAAACGAAC TCACAGACAC TTTAAATTCT GCCACTGGAC GTTTTCTTCA
  TTACTCCCCT CTCCCAAATT CAGATGAATG TCGGTCCATT CCCTATGTTC TGTCTAGCCT
  TGACATAGTT TATCGTGTGT TTATAGATGC CTGGTGTGTG CCGGGCCCTT CTCAGTATGA
  ACTCACATAT TCTGGTTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133182274	ENSMUSSNP2450726	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108361163					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50544205 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	within coordinates
Cycs	cytochrome c, somatic	687 bp upstream
Rr630033	regulatory region 630033	698 bp distal
Rr630034	regulatory region 630034	463 bp distal
Rr630035	regulatory region 630035	646 bp distal
Rr630036	regulatory region 630036	within coordinates
Rr630037	regulatory region 630037	135 bp distal
Tssr56423	transcription start site region 56423	475 bp downstream
Tssr60918	transcription start site region 60918	667 bp upstream
Tssr60919	transcription start site region 60919	648 bp upstream