rs108304801 SNP Detail

Summary

• ID
  rs108304801
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123179358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GTAGACTAGG GAATAAAAGT CCCGGGACAA AGACCTTGAC
  AGATGCTGAT GTGAGAGTTC ACCAAAAAAA AAAAAAAAAA AAAAAAAAAA AAATTTTTTT
  W
  AAAAGAGGCG GCCGCGCACG CGCACTAATG CTCCCTCCCA CCCGCCGCAC ACCTGCTGAG
  CTAGGAGCTG CCGCCGTAAC TTCTGCCGCT CCCGGATCTC C                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135764335	ENSMUSSNP5035064	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs108304801					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123179358 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	17 bp proximal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	Intron
Rr397990	regulatory region 397990	43 bp upstream
Rr584510	regulatory region 584510	within coordinates
Rr584511	regulatory region 584511	212 bp proximal
Tssr35499	transcription start site region 35499	37 bp upstream
Tssr35500	transcription start site region 35500	216 bp downstream
Tssr35501	transcription start site region 35501	285 bp downstream