rs108299034 SNP Detail

Summary

• ID
  rs108299034
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:80020075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACA AGAGGTTTTA TTTTGTTTGA
  C
  TTAGGGGTAC AATCACCAGC TGGAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145143053	ENSMUSSNP4834565	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322281240	CHEV_7_87515213	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs108299034					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80020075 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm71928	predicted gene, 71928			1137 bp upstream
Man2a2	mannosidase 2, alpha 2			Intron
				Noncoding-Transcript-Variant
Rr649878	regulatory region 649878			1038 bp proximal
Rr649879	regulatory region 649879			1049 bp proximal
Rr649880	regulatory region 649880			1102 bp proximal
Rr649881	regulatory region 649881			1148 bp proximal
Tssr67437	transcription start site region 67437			within coordinates
Tssr73220	transcription start site region 73220			1470 bp upstream
Tssr73221	transcription start site region 73221			1345 bp upstream
Tssr73222	transcription start site region 73222			456 bp downstream
Tssr73223	transcription start site region 73223			488 bp downstream
Tssr73224	transcription start site region 73224			516 bp downstream
Tssr73225	transcription start site region 73225			870 bp downstream
Tssr73226	transcription start site region 73226			1078 bp downstream
Tssr73227	transcription start site region 73227			1154 bp downstream