rs108293125 SNP Detail

Summary

• ID
  rs108293125
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:71158309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCAGCCG GGGGTTCTCC
  CTGGCCCAAT TCCCTCCCTC CCTACTCAGC TCCTTTGTTT CCCGCTCCAC TCGGCGCACC
  TCGGCGCTGT CAGAGTGAGA GAGCAGAGGG AAGGTACAGG AGGTCCTGCC TCCGCCCCCA
  ACCGCCCGCC CCGTCCCCCG CCCGCCCCGC CGCGCTCCTC TGCCCCTCCC CCGCACCTTC
  Y
  AGCTCCACAA CCCTGGGCCT GGGGGCCGAG ATCACCCGTC CCTCTACGCG CTGGCGGAAC
  CCAGAAGCAG GGTCATGCCT GCCTGCCCGT GGCGAGAGCA CCATCTCCAT CCCTCAGCTC
  TCAGCGGCCA CACTGGTTTC TCTTTTGGGG CCTTTCCTCC CCGGGCTAGC GAAGAGTGCA
  TTTAGTTTGT AAAGGATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398923312	MGP_WTSI_17_71200654	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108293125					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398923312	MGP_WTSI_17_71200654	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71158309 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56903	predicted gene, 56903			793 bp downstream
Gm56904	predicted gene, 56904			within coordinates
Rr405418	regulatory region 405418			938 bp upstream
Rr530335	regulatory region 530335			637 bp distal
Rr530336	regulatory region 530336			256 bp distal
Rr530337	regulatory region 530337			202 bp distal
Rr530338	regulatory region 530338			within coordinates
Rr530339	regulatory region 530339			410 bp proximal
Rr530340	regulatory region 530340			953 bp proximal
Rr530341	regulatory region 530341			1454 bp proximal
Rr530342	regulatory region 530342			1833 bp proximal
Tgif1	TGFB-induced factor homeobox 1			Coding-Synonymous
				Intron
				mRNA-UTR
Tssr145684	transcription start site region 145684			1845 bp downstream
Tssr145685	transcription start site region 145685			1127 bp downstream
Tssr145686	transcription start site region 145686			594 bp downstream
Tssr145687	transcription start site region 145687			22 bp upstream
Tssr145688	transcription start site region 145688			701 bp upstream
Tssr145689	transcription start site region 145689			1091 bp upstream
Tssr145690	transcription start site region 145690			1417 bp upstream
Tssr145691	transcription start site region 145691			1437 bp upstream
Tssr145692	transcription start site region 145692			1481 bp upstream
Tssr145693	transcription start site region 145693			1686 bp upstream
Tssr145694	transcription start site region 145694			1786 bp upstream
Tssr149220	transcription start site region 149220			1489 bp upstream
Tssr149221	transcription start site region 149221			956 bp upstream
Tssr149222	transcription start site region 149222			246 bp upstream
Tssr149223	transcription start site region 149223			227 bp upstream
Tssr149224	transcription start site region 149224			196 bp upstream
Tssr149225	transcription start site region 149225			98 bp upstream
Tssr149226	transcription start site region 149226			82 bp upstream
Tssr149227	transcription start site region 149227			313 bp downstream
Tssr149228	transcription start site region 149228			396 bp downstream
Tssr149229	transcription start site region 149229			442 bp downstream
Tssr149230	transcription start site region 149230			572 bp downstream
Tssr149231	transcription start site region 149231			918 bp downstream
Tssr149232	transcription start site region 149232			961 bp downstream
Tssr149233	transcription start site region 149233			1481 bp downstream
Tssr149234	transcription start site region 149234			1861 bp downstream