rs108278406 SNP Detail

Summary

• ID
  rs108278406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142325952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC AGTAATTTTT CTTCCTCCCT
  Y
  CTTCCCTCTC TTTGTCTCCC CCATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136016110	ENSMUSSNP3416657	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108278406					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142325952 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	472 bp upstream
Gbp2b	guanylate binding protein 2b	1012 bp downstream
Gm54185	predicted gene, 54185	909 bp upstream
Rr398088	regulatory region 398088	8 bp downstream
Rr586457	regulatory region 586457	1215 bp distal
Rr586458	regulatory region 586458	within coordinates
Rr586459	regulatory region 586459	422 bp proximal
Tssr32217	transcription start site region 32217	1968 bp downstream
Tssr32218	transcription start site region 32218	1914 bp downstream
Tssr32219	transcription start site region 32219	1877 bp downstream
Tssr32220	transcription start site region 32220	1863 bp downstream
Tssr32221	transcription start site region 32221	1845 bp downstream
Tssr32222	transcription start site region 32222	1789 bp downstream
Tssr32223	transcription start site region 32223	1732 bp downstream
Tssr32224	transcription start site region 32224	1678 bp downstream
Tssr32225	transcription start site region 32225	1340 bp downstream
Tssr32226	transcription start site region 32226	1300 bp downstream
Tssr32227	transcription start site region 32227	405 bp upstream
Tssr32228	transcription start site region 32228	456 bp upstream
Tssr32229	transcription start site region 32229	495 bp upstream
Tssr32230	transcription start site region 32230	531 bp upstream
Tssr32231	transcription start site region 32231	548 bp upstream
Tssr32232	transcription start site region 32232	1082 bp upstream
Tssr35947	transcription start site region 35947	1010 bp upstream