rs108213338 SNP Detail

Summary

• ID
  rs108213338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153505862 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      G GTTTTAGGGG TAGAGATGGT TCAGTGGTTA AGAGCACGGA
  CTGTTCTTCC AGTGGTCCTG AGTTCAGTTC CCAGTAACCA CATGGTGGCT CACAGCCATC
  Y
  GTAATGGGGA TCTGATGCCC TCCTCTGGTG TGCATGAAGA CAGCACCAGT GTACTCACAT
  ACATGAAATA AATAAATATT TTTTAAAAAG GACTCAGGTT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss131780769	ENSMUSSNP7038047	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108213338					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153505862 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnmt3b	DNA methyltransferase 3B			Intron
				Noncoding-Transcript-Variant
Rr567718	regulatory region 567718			10 bp distal