rs108190975 SNP Detail

Summary

• ID
  rs108190975
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:80018231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG CCCGCCCCAC ACCCTGCGGC
  R
  GCCGGGCCTA CTGGCCCTTC ACCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145143026	ENSMUSSNP6824321	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322281236	CHEV_7_87513369	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs108190975					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80018231 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Man2a2	mannosidase 2, alpha 2			Intron
				Noncoding-Transcript-Variant
Tssr67437	transcription start site region 67437			1836 bp upstream
Tssr73220	transcription start site region 73220			364 bp downstream
Tssr73221	transcription start site region 73221			496 bp downstream