rs108154350 SNP Detail

Summary

• ID
  rs108154350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161616802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ACTTCAGTCT TCTGGCCACA CACACACACA CACACACACA
  AGTCTTCTGG CCACACACAC ACACACACAC ACACACACAC AAGTCTTCTG GCCACACACA
  Y
  ACACACACAC ACACCATTTA TGTCTAATAA CCTCTAAGAA CTCAGTCTCG GTTCCCATTA
  CTTTCCCATA TAAACCATAT AAATCCCAAT AAGTTCCTAT A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145922226	ENSMUSSNP6126744	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs108154350					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161616802 () rs orientation: forward

Symbol	Name	Function Class
Fasl	Fas ligand	738 bp upstream
Rr421846	regulatory region 421846	562 bp distal
Tssr14586	transcription start site region 14586	858 bp upstream
Tssr14587	transcription start site region 14587	777 bp upstream
Tssr14588	transcription start site region 14588	762 bp upstream
Tssr14589	transcription start site region 14589	750 bp upstream
Tssr14590	transcription start site region 14590	737 bp upstream
Tssr14591	transcription start site region 14591	727 bp upstream