rs108129732 SNP Detail

Summary

• ID
  rs108129732
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50544191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGGGGA AGGTACGCAC
  AAGTGGCAGA CAGGATCACA TCTTACCCAG AGTCCCTGTT TTCTTCCCCT AGTGTTTGTA
  GAAAACGAGG AGGGTGTGCA GGCAAGCTTT AAGGGAGAAG CAGGATTCGC CTGAGTAGAG
  GATTCCCGGG AATCCGCTAG ACTTGGCATC CCTTCTGACC ATATTGGAAA TGGAAGTCTC
  S
  TTAGCATACT TTCCTGGTGT ACTTCAAAAC GAACTCACAG ACACTTTAAA TTCTGCCACT
  GGACGTTTTC TTCATTACTC CCCTCTCCCA AATTCAGATG AATGTCGGTC CATTCCCTAT
  GTTCTGTCTA GCCTTGACAT AGTTTATCGT GTGTTTATAG ATGCCTGGTG TGTGCCGGGC
  CCTTCTCAGT ATGAACTCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133182270	ENSMUSSNP2569315	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108129732					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50544191 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	within coordinates
Cpgi17392	CpG island 17392	144 bp distal
Cycs	cytochrome c, somatic	673 bp upstream
Rr630033	regulatory region 630033	684 bp distal
Rr630034	regulatory region 630034	449 bp distal
Rr630035	regulatory region 630035	632 bp distal
Rr630036	regulatory region 630036	within coordinates
Rr630037	regulatory region 630037	121 bp distal
Tssr56423	transcription start site region 56423	461 bp downstream
Tssr60918	transcription start site region 60918	653 bp upstream
Tssr60919	transcription start site region 60919	634 bp upstream