rs108109392 SNP Detail

Summary

• ID
  rs108109392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87413866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTGTCTTC TGGACGTGAC ATAACTGTTG CAATCACAAA
  CTCACAGCAG CTGAGATTGT CTGCAATGGG TCTGTGCAAC CACCAATGAT ATATTGGGGG
  R
  GGGGGGACTC AGGAGCCTTG CCCCTCCCCC AGGGAACCAT TGGCTGCTGT GGGAAGGAGA
  AGTCACTGTA GTCAGTGGTG GCCATGCTCT AGTAAATAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135463086	ENSMUSSNP139567	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320833937	CHEV_3_87310481	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs108109392					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87413866 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	1625 bp upstream
Rr397759	regulatory region 397759	within coordinates
Rr397760	regulatory region 397760	1677 bp upstream
Rr579498	regulatory region 579498	1484 bp distal
Rr579500	regulatory region 579500	within coordinates
Rr579501	regulatory region 579501	1436 bp proximal
Rr579502	regulatory region 579502	1778 bp proximal
Rr579503	regulatory region 579503	1844 bp proximal