rs108087686 SNP Detail

Summary

• ID
  rs108087686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161617143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTGCCCCA CCCCAGCTGC TAATTCTCCT GAGGTCACTC
  TGCTGGCAAT CTCAGGCTGT TCCTTCCTTT TGCCCCCAGC CCTTCCCCCC GCACCCTCCC
  Y
  GCCCCACCCT GATCATCCAG GCCTGCTTTT TCTCACCTGT GACACATTTC TTATCTTCCC
  CTCCTTCCCT AGTCCCATGG CTGCTCTCCC TGTACCAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145922242	ENSMUSSNP277372	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108087686					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161617143 () rs orientation: forward

Symbol	Name	Function Class
Fasl	Fas ligand	1079 bp upstream
Rr421846	regulatory region 421846	903 bp distal
Rr421847	regulatory region 421847	1978 bp proximal
Tssr14586	transcription start site region 14586	1199 bp upstream
Tssr14587	transcription start site region 14587	1118 bp upstream
Tssr14588	transcription start site region 14588	1103 bp upstream
Tssr14589	transcription start site region 14589	1091 bp upstream
Tssr14590	transcription start site region 14590	1078 bp upstream
Tssr14591	transcription start site region 14591	1068 bp upstream