rs108068807 SNP Detail

Summary

• ID
  rs108068807
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50544167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTCTCC CAGTGAGAGC
  CTCAAAGCTG GGGAAGGTAC GCACAAGTGG CAGACAGGAT CACATCTTAC CCAGAGTCCC
  TGTTTTCTTC CCCTAGTGTT TGTAGAAAAC GAGGAGGGTG TGCAGGCAAG CTTTAAGGGA
  GAAGCAGGAT TCGCCTGAGT AGAGGATTCC CGGGAATCCG CTAGACTTGG CATCCCTTCT
  R
  ACCATATTGG AAATGGAAGT CTCCTTAGCA TACTTTCCTG GTGTACTTCA AAACGAACTC
  ACAGACACTT TAAATTCTGC CACTGGACGT TTTCTTCATT ACTCCCCTCT CCCAAATTCA
  GATGAATGTC GGTCCATTCC CTATGTTCTG TCTAGCCTTG ACATAGTTTA TCGTGTGTTT
  ATAGATGCCT GGTGTGTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133182262	ENSMUSSNP2563744	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108068807					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50544167 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	within coordinates
Cycs	cytochrome c, somatic	649 bp upstream
Rr630033	regulatory region 630033	660 bp distal
Rr630034	regulatory region 630034	425 bp distal
Rr630035	regulatory region 630035	608 bp distal
Rr630036	regulatory region 630036	within coordinates
Rr630037	regulatory region 630037	97 bp distal
Tssr56423	transcription start site region 56423	437 bp downstream
Tssr60918	transcription start site region 60918	629 bp upstream
Tssr60919	transcription start site region 60919	610 bp upstream