rs108001575 SNP Detail

Summary

• ID
  rs108001575
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116308019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CAGGAAAGCA TCAACTCCAT CAACTTGTTC TGTGACCTTG
  TCTTCGGAGG TACAAGTGCG CGCGCACACA CACACACACA CACACACACA CACACACACA
  G
  AGAGTGTGGT GCTTTGAATG AAAAATGGCC TCCATATTCT CATAGGAAGT AGCACTATTG
  AGAAATGTGG CCTTGTTTGA GGAAGTGTGT CACTGGGGGT A                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147278951	ENSMUSSNP3108011	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108001575					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116308019 () rs orientation: forward

Symbol	Name	Function Class
Gm12950	predicted gene 12950	1618 bp downstream
Mast2	microtubule associated serine/threonine kinase 2	Intron
Rr597911	regulatory region 597911	1877 bp distal
Rr597912	regulatory region 597912	1929 bp distal