rs107957133 SNP Detail

Summary

• ID
  rs107957133
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107545724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGCTGCA CTGGGCAGCC
  TGAGCCAGAG GGGTGTTTGG CTAACCCAGC GGGTGTTAAT GGCTTAGACA GAGCTGGAAG
  CACGGCTTTG TCTGGACTTG CCCTGGTCAT CGCTAAGACA GAGTGAAAGT CCCGTTTACA
  AAGCCAAGCA GTGAGCAAAA CAGACAGACG GGAGACAAGC AGTGAGCAGA ACAGACAGAC
  R
  GGAGACAAGG CTTTCATGCT GATGCCCACG ACGGTTGCTC CTGGGAAAGG CAAGAACGGT
  CTTAAGAAAT AACAGGAAAA AGCTGGTCCT GACCGTGGCC GTTGATGCTG CCTGCACATT
  GCTCTGGAAA GAGACAGGAG ACAGAGTTGA TTCAAACACT ATGCAGTGCC CAGGACTACT
  TTTTAATTTT TAAAAAATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147182419	ENSMUSSNP1412543	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321250046	CHEV_4_107361132	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs107957133					SNP	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107545724 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	1073 bp upstream
Gm12899	predicted gene 12899	within coordinates
Rr376978	regulatory region 376978	within coordinates
Rr597042	regulatory region 597042	within coordinates
Tssr38260	transcription start site region 38260	34 bp downstream