rs107934261 SNP Detail

Summary

• ID
  rs107934261
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26487874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGTGAGT TCCATGATAG
  CCAAGGCTAC ACAGAAACCC TGCCTGGAAA AACAAAAACA AACAAACAAA AAACAAAAAG
  AAAAAAGAAA AGAAAGAGGA AGAGCGTGGC TGTCTATGAC CAGGACTCCC TACCCTGTCT
  GTTCTCCTTC ATTTCTCCGT TCCAGCTCTT TATCTATCAA AAGCCACATT CCTCTCTCTA
  C
  ACACACACAC ACACAAAACT GTTAGCACAG TGGGAGAGAG TCCACAGCTG ACTCATTCTG
  AAGCAGTCAG CACCAGGACT GTGCTCCCTC CATATCTTAG TATTGCCTTT TGGCCAGATT
  GGGAGCACTG TGACCTTCCC CATGGCAGCT TGCTTTTTTT TTTTTTTTTA AGGTTTATTT
  ATTTATTTTG AGTACACCAT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145398366	ENSMUSSNP2932227	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107934261					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26487874 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm16580	predicted gene 16580			437 bp upstream
Gm50013	predicted gene, 50013			within coordinates
Luc7l	Luc7-like			Intron
				Noncoding-Transcript-Variant
Rr523804	regulatory region 523804			234 bp proximal
Tssr143221	transcription start site region 143221			1360 bp upstream
Tssr143222	transcription start site region 143222			1452 bp upstream
Tssr143223	transcription start site region 143223			1490 bp upstream