rs107747069 SNP Detail

Summary

• ID
  rs107747069
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41442222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGCACAC ACCAAAAAGA
  GACATTCTGT AATTGGCCTG TGTCTTAGTT AGGGTTTTAC TGCTGTGAAC AGACACCATG
  ACCAAGGTAA CTCTTATAAG GACAAATTTA ATTGGGGCTG GCTTACAGGT TCAGAGGTTC
  AGTCCATAAT CATCAAGGCA GGAACATGGC GATATCCAGG CAGGTATAGT GCAGGAGATG
  M
  TGAGAGTTCT ACATCTTCAT CTGAAGGTTG CTAGTGGAAG ACTGACTTCC AGAAGCTAAG
  GATGAGGGTC TTAAAGCCCA CGCCCACGGT GACACACCTA TTCCAAGAAG ACCACACCCC
  TAACAGTACC ACTCCCTGGG CCAAACATAT TCAAACCATG ACAGCCTGTA TGATCCAAAA
  TTGTTCAACC TGTCATGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144983361	ENSMUSSNP524832	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs107747069					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41442222 () rs orientation: forward

Symbol	Name	Function Class
Gm6069	predicted gene 6069	1592 bp downstream
Platr4	pluripotency associated transcript 4	within coordinates
Rr575951	regulatory region 575951	456 bp proximal
Rr575952	regulatory region 575952	1710 bp proximal