rs107683647 SNP Detail

Summary

• ID
  rs107683647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:71156143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGGCTGT GGAGGCTTGC
  AGCCGAGGGA GGGGCAAGAG GAGAGAGCAA GCAGCTTTTG TTCTTCAGCC CCAACTGAAG
  CCCGCCTGCT AACTGTACAA GTTAGCAACG GAGCTGGCCC CTGGTCCCTA AGGAAGTAAA
  GAAATGGGGC GGTGCGGTTC ATATCCTCAA GGGTCTGCCC CCTTCCCAGA CCCAGTGCCG
  R
  GGAAGCCTAA AAAAGGGAAA AGGAGCCAGG ACAACCTTAG CAGTCTCAGC TCTCCCAATG
  AGAAACTCGA AATCGGTCTC AGCAAAGTTT CCTCTCCAAC ACGTCACCGT TCATCGTTTC
  CATGAGTCGG GGGGATTGAC TTGGGGAACC CACGCTCTTT GGGCTGGGGA CCTCGCATCT
  GGGGAAGGGG ACACCCAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398923293	MGP_WTSI_17_71198488	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs107683647					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398923293	MGP_WTSI_17_71198488	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71156143 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56904	predicted gene, 56904			1452 bp upstream
Rr405417	regulatory region 405417			1655 bp downstream
Rr530333	regulatory region 530333			1925 bp distal
Rr530334	regulatory region 530334			339 bp distal
Rr530335	regulatory region 530335			632 bp proximal
Rr530336	regulatory region 530336			1530 bp proximal
Rr530337	regulatory region 530337			1911 bp proximal
Tgif1	TGFB-induced factor homeobox 1			Intron
				Noncoding-Transcript-Variant
Tssr145684	transcription start site region 145684			312 bp upstream
Tssr145685	transcription start site region 145685			1009 bp upstream
Tssr145686	transcription start site region 145686			1547 bp upstream
Tssr149219	transcription start site region 149219			131 bp downstream
Tssr149220	transcription start site region 149220			633 bp downstream
Tssr149221	transcription start site region 149221			1205 bp downstream
Tssr149222	transcription start site region 149222			1909 bp downstream
Tssr149223	transcription start site region 149223			1927 bp downstream
Tssr149224	transcription start site region 149224			1961 bp downstream