rs107680623 SNP Detail

Summary

• ID
  rs107680623
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107545773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGTGTTAA TGGCTTAGAC
  AGAGCTGGAA GCACGGCTTT GTCTGGACTT GCCCTGGTCA TCGCTAAGAC AGAGTGAAAG
  TCCCGTTTAC AAAGCCAAGC AGTGAGCAAA ACAGACAGAC GGGAGACAAG CAGTGAGCAG
  AACAGACAGA CAGGAGACAA GGCTTTCATG CTGATGCCCA CGACGGTTGC TCCTGGGAAA
  G
  GCAAGAACGG TCTTAAGAAA TAACAGGAAA AAGCTGGTCC TGACCGTGGC CGTTGATGCT
  GCCTGCACAT TGCTCTGGAA AGAGACAGGA GACAGAGTTG ATTCAAACAC TATGCAGTGC
  CCAGGACTAC TTTTTAATTT TTAAAAAATG TGTGTGTGTG TATGTCTTTG TGTATGAACA
  CGTGTGTGTG TGTGTGTGTG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147182423	ENSMUSSNP6298439	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107680623					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107545773 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	1024 bp upstream
Gm12899	predicted gene 12899	within coordinates
Rr376978	regulatory region 376978	within coordinates
Rr597042	regulatory region 597042	within coordinates
Tssr38260	transcription start site region 38260	83 bp downstream