rs107646851 SNP Detail

Summary

• ID
  rs107646851
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:3768629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCTTTTGT CACGGAGCCT
  ATATGGGGAT GGGGCAAAAA CCAGTCTTGC CCCCACTTGC CTCTCCCAAA CCACCTGCCC
  CATTTCCCAG CCCCTCAACT TTCAAGTTTT CACCAAACCC CTCTTTCTTA CAGCAATTCC
  TGCAGGCTCC GATATCATCC TTCAGGGAAC TCAACGTCAT CTTCTGCTCT GAGGCTGGAA
  M
  GACCCCACCC ACCACACACA AACCAGTCAA CCCGATTGCA GCGGCCTCAG CTATTCACTA
  CCCAGGTCCT CCTCCCTGGC AGTTCCTCCT CCCACCGCAA GGGTGCGCTG CCGCCCTGCG
  CTGCAGCTCC TCACGCACCA TTTGTCCTCA GCAGGTCCTG GTGGCTGAGC AGCACCCTGA
  GCTTGCTGGA GGCTGCAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148548827	ENSMUSSNP7030775	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs107646851					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3768629 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clec4g	C-type lectin domain family 4, member g			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Gm16553	predicted gene 16553			within coordinates
Rr400747	regulatory region 400747			within coordinates
Rr658970	regulatory region 658970			9 bp distal
Rr658971	regulatory region 658971			91 bp proximal
Tssr80223	transcription start site region 80223			1071 bp upstream
Tssr80224	transcription start site region 80224			1047 bp upstream