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MTF#542 Probe Detail
Nucleotide
Probe/Clone
  • Name
    MTF#542
  • Sequence Type
    cDNA
  • ID
    MGI:3506260
  • Region Covered
    Nucleotides 831-1529 of GenBank Accession ID U59496.
  • Vector Type
    Plasmid
  • Insert Site
    XbaI/XhoI
  • Insert Size
    0.698kb
  • Note
    The source of the material used to create this cDNA probe was different than that used to create the GenBank sequence record. Fragment was generated by PCR with primers TGCTCTAGAGTGGAAGGTGCTTCACTGCACG and CCGCTCGAGCAGTTTCTGTGTCATCGCTGCC. Template sequence provided by Paul Gray:
    GNTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGCCCTTTGCTCTAGAGTGGA
    AGGTGCTTCACTGCACGGGCCATATTCATGTCTATGATACCAACAGTAACCAACCTCAGT
    GTGGGTACAAGAAACCACCCATGACGTGCTTGGTGCTGATTTGTGAACCCATTCCTCATC
    CGTCAAATATTGAAATTCCTTTAGATAGCAAGACATTTCTCAGTCGACACAGCCTCGATA
    TGAAATTTTCTTACTGTGATGAAAGAATTACTGAGTTGATGGGTTATGAGCCGGAAGAAC
    TTTTGGGCCGCTCAATTTATGAATATTATCATGCTTTGGATTCTGATCATCTGACCAAAA
    CTCACCATGATATGTTTACTAAAGGACAAGTCACCACAGGACAGTACAGGATGCTTGCCA
    AAAGAGGTGGATATGTCTGGGTTGAAACTCAAGCAACTGTCATATATAATACGAAGAACT
    CCCAGCCACAGTGCATTGTGTGTGTGAATTATGTTGTAAGTGGTATTATTCAGCACGACT
    TGATTTTCTCCCTTCAACAAACAGAATCTGTGCTCAAACCAGTTGAATCTTCAGATATGA
    AGATGACTCAGCTGTTCACCAAAGTTGAATCAGAGGATACAAGCTGCCTTTTTGATAAGC
    TTAAGAAGGAGCCTGATGCTCTCACTCTGCTGGCTCCAGCTGCCGGCGACACCATCATCT
    CTCTGGATTTTGGCAGCGATGACACAGAAACTGCTCGAGCGGAANGGCGAATTCCAGCAC
    ACTGGCGGCCGTTACTAGTGGATCCGAGCTCGGTACCAAGCTTGGATGCATAGCTTGAGT
    ATTCTATAGTGNCACCTAAATAGCTTGGCGTAATCATGGTCATAGCNTGNTTNCCTGTGT
    GAAANTGTTNTCCCGCCCCNCANTCCCACACAACATACGAGCCGGNAAGCATAAAGNGTA
    AAGCCCGGGGGNGCCTAATGAGNNGANCTANCTCCNTTTAATNGCGNTGCGCCTCNCTGC
    CCC
  • Synonyms
    GUDMAP:5575 probe, maprobe:295
Source
  • Species
    mouse, laboratory
  • Strain
    C57BL
  • Age
    embryonic day 13.5
  • Tissue
    brain
Genes
Hif1a hypoxia inducible factor 1, alpha subunit
Expression
  • Assay Results
    50
Sequences
U59496 (GenBank | EMBL | ENA | DDBJ | MGI Sequence Detail)
References
J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
J:186535 Herriges JC, et al., Genome-scale study of transcription factor expression in the branching mouse lung. Dev Dyn. 2012 Sep;241(9):1432-53
J:190636 Wiese CB, et al., A genome-wide screen to identify transcription factors expressed in pelvic ganglia of the lower urinary tract. Front Neurosci. 2012;6:130
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
05/21/2024
MGI 6.23 		The Jackson Laboratory