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MTF#541 Probe Detail
Nucleotide
Probe/Clone
  • Name
    MTF#541
  • Sequence Type
    cDNA
  • ID
    MGI:3506259
  • Region Covered
    Nucleotides 162-882 of GenBank Accession ID AF060194.
  • Vector Type
    Plasmid
  • Insert Site
    EcoRI/HindIII
  • Insert Size
    0.72kb
  • Note
    The source of the material used to create this cDNA probe was different than that used to create the GenBank sequence record. Fragment was generated by PCR with primers CCGGAATTCCAGGAGACGGAGGTGCTGTACC and CCCAAGCTTGGTCATCAGGACTGTAGCCAGC. Template sequence provided by Paul Gray:
    GCNNGTGTGATGGATATCTGCAGAATTCGGCTTCCGGAATTCCAGGAGACGGAGGTGCTG
    TACCAGCTGGCGCACACTCTGCCCTTTGCGCGCGGCGTCAGCGCGCACCTGGACAAGGCC
    CCCATCATGCGCCTCACAATCAGCTACCTGCGCATGCACCGCCTCTGCGCAGCAGGGGAG
    TGGAACCAGGTGGAAAAAGGGGGAGAGCCACTGGACGCCTGCTACCTGAAGGCCCTGGAG
    GGTTTCGTCATGGTACTCACCGCCGAGGGAGACATGGCTTACCTGTCGGAAAATGTCAGC
    AAGCACCTGGGCCTCAGTCAGCTGGAGCTCATTGGACACAGTATCTTTGATTTTATCCAT
    CCCTGTGACCAAGAGGAACTTCAAGACGCCCTGACCCCCAGGCCGAACCTGTCAAAGAAG
    AAGCTGGAAGCCCCAACAGAGCGCCACTTTTCCCTGCGAATGAAGAGCACGCTCACCAGC
    AGAGGGCGCACGCTCAACCTCAAAGCGGCCACCTGGAAGGTGCTGCACTGCTCAGGACAT
    ATGAGGGCCTACAAGCCCCCTGCACAGACTTCCCCTGCCGGGAGCCCTCGCTCCGAGCCT
    CCCCTGCAATGCCTGGTGCTTATCTGTGAAGCCATCCCCCACCCAGCCAGTCTGGAGCCC
    CCGCTGGGCCGAGGGGCCTTTCTCAGTCGCCACAGCCTGGACATGAAGTTCACATACTGC
    GACNGGAGGATTGCAGAAAGTTGCTGGCTACAGTCCTGATGACCAAGCTTGGGAAGCCGA
    ATTCCAGCACACTGGCGGCCGTTACTAGTGGATCCGAGCTCGGTACCNAGCTTGATGCAT
    AGCTNGAGTATTCTTTAAGTGTCACCTAAATAGCTNGGCGTATCATGGTCATAGCTGNTT
    CCTGGGTGNAANTGTTANCCGCTCANAATTNCCNCNACATANAGCCGGAAGATAAANGTA
    AGCCTGGGGGCCTATGANTGAGCTANNCCCTTNNTGNT
  • Synonyms
    GUDMAP:5574 probe, GUDMAP:12582 probe, GUDMAP:12583 probe, maprobe:294
Source
  • Species
    mouse, laboratory
  • Strain
    C57BL
  • Age
    embryonic day 13.5
  • Tissue
    brain
Genes
Hif3a hypoxia inducible factor 3, alpha subunit
Expression
  • Assay Results
    74
Sequences
AF060194 (GenBank | EMBL | ENA | DDBJ | MGI Sequence Detail)
References
J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
J:186535 Herriges JC, et al., Genome-scale study of transcription factor expression in the branching mouse lung. Dev Dyn. 2012 Sep;241(9):1432-53
J:190636 Wiese CB, et al., A genome-wide screen to identify transcription factors expressed in pelvic ganglia of the lower urinary tract. Front Neurosci. 2012;6:130
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory