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MTF#539 Probe Detail
Nucleotide
Probe/Clone
  • Name
    MTF#539
  • Sequence Type
    cDNA
  • ID
    MGI:3506257
  • Region Covered
    Nucleotides 1804-2621 of GenBank Accession ID AF000998.
  • Vector Type
    Plasmid
  • Insert Site
    HIII/XhoI
  • Insert Size
    0.817kb
  • Note
    The source of the material used to create this cDNA probe was different than that used to create the GenBank sequence record. Fragment was generated by PCR with primers CCCAAGCTTATGACACAGCGGAGGTCGTCC and CCGCTCGAGGTGCCTGCTGCTGTTGTGTGG. Template sequence provided by Paul Gray:
    GNTCGAGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGCCCTTCCCAAGCTTATGAC
    ACAGCGGAGGTCGTCCTTCAGCAGTCAGTCCATAAACTCCCAGTCAGTTGGTCCATCATT
    AACACAGCCAGCGATGTCTCAAGCTGCAAATTTACCAATTCCACAAGGCATGTCACAGTT
    TCAGTTTTCAGCTCAGTTAGGAGCCATGCAGCATCNAAAAGACCAGCTAGAGCAGCGGAC
    ACGGATGATAGAGGCAAATATTCATCGGCAGCAAGAAGAACTAAGGAAAATTCAAGAGCA
    ACTTCAGATGGTCCATGGTCAAGGGCTACAGATGTTTTTGCAGCAATCAAACCCTGGATT
    GAATTTTGGNTCTGTTCAACTTTCCTCTGGAAATTCTAATATCCAGCAACTCACACCTGT
    AAATATGCAAGGCCAGGTTGTCCCTGCTAACCAGGTTCAGAGTGGACATATCAGCACAGG
    CCAGCNCATGATACAGCAACAGACTTTACAAAGTACATCAACTCAGANTAGTCAAAGTNN
    AGTNATGGGNGGACGCCGNCAGANGACNNTTCTNCGTAGTAAGACNNNGAGTCNTCTCNC
    CCCCCTGTTGAATAATACGATGATGNCCCNNCCGGCTGCTGGTNGGAGGNTNNNNATTNN
    TCCNTNCATGCNGCCAAACAGNACCNCCNGGAGTGCTGCCCNNNACTTTCANTCNCTGAC
    GGACAGACANAAATTNTNTCCANGNCGGGCAANCTTGTGGCNANCTTATTGNACGNCTGC
    TGCTGCCTTGTTGGGGCGGCCATGGTGCCAACAACCNTGCTTNTTNGGTNCCGCGNGGTG
    NATNGCCTGACCATACTTTCCTCCCCAAANCACAGCNGGGAGGTCCCCNNNGGNNGGGGG
    NANTNATTTCCCCCGGGCGGGCCGTTCNTACNGGNGCCACACNACGTNCCCANCCNTNTT
    GNATANCCTNGGTGGACTCTNNNCNGGGGNCCCCNAAAANCTGGGGTGGGATAAAAGNNN
    GAAAATTNNTTTTTCGGGGGGAAAAANTNNTCCNCCCCNCCANACCC
  • Synonyms
    GUDMAP:5572 probe, maprobe:292
Source
  • Species
    mouse, laboratory
  • Strain
    C57BL
  • Age
    embryonic day 13.5
  • Tissue
    brain
Genes
Clock clock circadian regulator
Expression
  • Assay Results
    44
Sequences
AF000998 (GenBank | EMBL | ENA | DDBJ | MGI Sequence Detail)
References
J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/14/2024
MGI 6.23
The Jackson Laboratory