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MTF#247 Probe Detail
Nucleotide
Probe/Clone
  • Name
    MTF#247
  • Sequence Type
    cDNA
  • ID
    MGI:3506105
  • Region Covered
    Nucleotides 222-933 of GenBank Accession ID AF308572.
  • Vector Type
    Plasmid
  • Insert Site
    BamHI/HindIII
  • Insert Size
    0.711kb
  • Note
    The source of the material used to create this cDNA probe was different than that used to create the GenBank sequence record. Fragment was generated by PCR with primers CGCGGATCCCGCTTCACTCCTGCCCTTCAGC and CCCAAGCTTCATGCTGTAGCCTACATGGGCG. Template sequence provided by Paul Gray:
    TANCGGNCCCCCCTCGAGTCGACGGTATCNATAAGCTTCATGCTGTAGCCTACATGGGCG
    GTGTAGAGTCCCACGGGCGCTACAGGCAGCGCGGCGCGCTGGAAAGGGCCAGAGGCACTG
    TAGAGTGAGGCGCCCGCAGCTGCAGCCACCGCTGCAGGACCGCCNAGAGGAAAAGAGAGG
    CCGAAGGCAGCAGGCGGCAACATGGGTTTCGCGGCCATCTTCANCTTCTCCAGANTCCGC
    CTCCTGCAGTCTCTTGGCCTTAGCGCGACNGTTCTGGAACCAGATCTTCACCNGGGTCTC
    GGTGAGGCTGAGCGAGCTGGAGAATTNCNCGCGCCTCGGCAATAGACAGGTACTGCTTNT
    GGCGGAACTTGCCNCTCCAAAACCAACAGCTGANCCTGTGGGTGAAAGGGNAACCGGGCN
    TTGCNGNTGAGTCNTGNGCNNNGCGCNAANGAGCANGCTCGGNCGGACTCCNATCGCCTT
    CTNNGNATGGAGNCGCCGGNNGTAGAATNCAGAGGANNTCCNCNCTCTTCCACCNGGGNG
    CCCCNAANNNANNTTTCCTCNCNNGGCTTTATTNACGGNCCTTTTTCNCCAAGAANCNAT
    ACCNTCANGANNGANGANTTNTNNNGACGNGNNNTCCTTCCCCNAAATNNTAAAAACANN
    GTGNNCNCCACNACACNACCACCCCNNCTANAATAAGANNNCTNCNACTACCTTNGNNGG
    CCNCCCCCNCNAANACNCACTNTAGNCCGNAGNTAGCGCCCAANNTNNCCCTGNTTNTCC
    GACNCNACCGCTCCGCNTNNCGNNAATCGANAGGCTACCCCGNNNNTANNAANGTNACNN
    NACCAAATANAACATACANCCGCGCCNTCTATGNNNNNCGNCATCACNCNNATNCTTCTN
    CACTGCNCANATNTAGTNTTCNACACANTCNAAACCGCGCGCNCNNTCTCGCACGNTCCG
    CTNAATNGNNGACANNCCGCTCTNGAATAGNCNGCNNNNAACATAGCCCNCTAAATAANT
    NGNGCTNTGNACTCTCTNTCNNNNANNCCANGCTCNTNGCNGGNTCNNCNCNTCCCANCT
    NACTCCGCNGCNTNGCTGGTCGNAAACGCCNCTTCCNNCNNCNAANAANANAAANTNNNA
    TNCAANTATNCCNCNAACTATANCNTCATNAAAANANCNTAGNAAANCTNGGNAAAAATC
    NAANGAANCTATTTNCACAAACCNCNACCTTTCCNCTNNCANATCCTATNNTTATNNTNT
    TATACNANTNCCCCTAACNNNTNTTTNNNCAAANANTTCNTGGGTCCNNGNNTCCTTNCT
    NAGGNCNGGNNNCTAAAATAAAATNATGAAGAAGTTTTTCCNANCCANAGCCGNCTTCCT
    AATNCTNTNANTAACTGTCNTTTNATACCNNNGGNNNCAGGTNCAANTNAACTACNATCC
    ANCCCCCCCTTTTNGGCTNNTNCNTCCGGAATTGNNNGAATGGAANCCACANCATCCNCN
    CCTTNNGNGCGGCTGCNAANACTATANCCCAANCCANTNCNCANTTTCAGNCCTNNACNA
    NCACAANATGNAANACNNGNCNTNNNCATNGTANAAACNTNGTGACNNATNAGCCTTCNG
    NAGGNNCATNANCAGANNCTNACCNNCNTTCCGTCCCCGGCTNCACNATTCTCCNNNCTT
    TTTTCNNNATNNNACNNNCANCTNNCCANNCGTNTCANTNANTANNTGCATTTNTANCTT
    TTNCNNTACNTTCCNNTACTTACTTGTNGAAAAACCGNNATNTTATNCCANGCCNTANAT
    CCGGCGTTAANAAGACNNNTTGANATATTNTCNTNCCACCTGNATNAAACCNGAAGATCC
    TNANTNNNTTTTNACTATTTCNCCNCGNNATCTTACCCGCAANATNTCAACNCCCNCAAA
    CNTTATGACN
Source
  • Species
    mouse, laboratory
  • Strain
    C57BL
  • Age
    embryonic day 13.5
  • Tissue
    brain
Genes
Msx1 msh homeobox 1
Expression
  • Assay Results
    34
Sequences
AF308572 (GenBank | EMBL | ENA | DDBJ | MGI Sequence Detail)
References
J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
J:168654 Chung YC, et al., Screening large numbers of expression patterns of transcription factors in late stages of the mouse thymus. Gene Expr Patterns. 2011 Jan-Feb;11(1-2):84-92
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory