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MTF#145 Probe Detail
Nucleotide
Probe/Clone
  • Name
    MTF#145
  • Sequence Type
    cDNA
  • ID
    MGI:3506025
  • Region Covered
    Nucleotides 510-1211 of GenBank Accession ID M22115.
  • Vector Type
    Plasmid
  • Insert Site
    HindIII/XbaI
  • Insert Size
    0.701kb
  • Note
    Fragment was generated by PCR with primers CCCAAGCTTGGTTATGCTGGGGCACAGTGG and TGCTCTAGAGGCCAGGAGCTCCCCAGATGG. However, the 5' primer does not match the proposed gene. Template sequence provided by Paul Gray:
    GCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGGCTTGTCCTACTTAAGGGCTAGGTG
    GAGAAGAACAATACATAGATAAAAGGAGAGATGCCTCCTTCCTGCAAATGTCTGATGGCA
    AAGGGAACTAACTGTTCTCCAGCCGACATCTAAAAGGAATCATAGGTTGTGGGGAGAAAA
    AAATCTCACAACAGTGAAGGAAAGGATGTTGGGAGCCATCAGCAATTGATGTGGACACCC
    GATGTGGATGAAGGAGTTAACTTCCAACCAAGGCTCCAGAATTCTCTGGAAATACCTTAT
    CTTGGCCAGGAGCTCCCCAGATGGGACGAGAAAGGAAGAGAGAGTCTGTAAAGAAAGGAA
    GATAAGCTAAGAATGTGCTTTGGGTAAGAAATCCCAGCCCAGGGAGAAGCCTGGGCTGCA
    GAGTTGGGCTGGAGTAGCCTCAGTGGGAGGTAGTCAGAGTGTCTGAGGTAGACGATGCCG
    GAGAAGGGGCACTGGGCGAGGGGCTAGATTTCTCAGATGATTCTTCCGTTTTCTCATCGC
    TGCCAGGAGGAGTGGCAGGGGAGATGGGCAGGAGCCCCTCCTTCTCACGCTTCTTCTGCT
    TCATGCGGCGATTCTGGAACCAGATCTTCACCTGGGTCTCATTGAGCTGTAGGGACGCGG
    CAATCTCCACCCTGCGCGCTCGTGTAAGGTACTTGTTGAAGTGGAACTCCTTCTCCAGCT
    CTGTGAGCTGCTTGGTGGTGAAATTGGTGCGCACTGCGTTGGGTTGACCCCAAGCCGAAT
    TCCAGCACACTGGCGGCCGTTACTAGTGGATCCGAGCTCGGTACCNAGCTTGATGCATAG
    CTTGAGTATTCNATNGNGNCNCCTAAATAGCTTGGCGTAATCATGGTCATAGNCTGGTTC
    CTGNGTGAAATTGTTATCCGCTCCNATTTCCCAAANNTACGAGCCCGNAAGCAAAAGGGT
    AAAGCCNGGGGGGNCTAATGAGNGGGCTACCCCNTTAATTGGGTTGGNCTACTGNCCCCT
    TNCANTCGGNAACCTTTCGNCCNCCTNNNTTNTGANCGCCCACCCCNCGGGNAAGNGGGT
    TGCCATTGGGGGCTTTCCNNTCCCNCCANNAAA
  • Synonyms
    GUDMAP:5289 probe, maprobe:101
Source
  • Species
    mouse, laboratory
  • Strain
    C57BL
  • Age
    embryonic day 13.5
  • Tissue
    brain
Genes
Hoxa1 homeobox A1
Expression
  • Assay Results
    54
Sequences
M22115 (GenBank | EMBL | ENA | DDBJ | MGI Sequence Detail)
References
J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
J:168654 Chung YC, et al., Screening large numbers of expression patterns of transcription factors in late stages of the mouse thymus. Gene Expr Patterns. 2011 Jan-Feb;11(1-2):84-92
J:186535 Herriges JC, et al., Genome-scale study of transcription factor expression in the branching mouse lung. Dev Dyn. 2012 Sep;241(9):1432-53
J:190636 Wiese CB, et al., A genome-wide screen to identify transcription factors expressed in pelvic ganglia of the lower urinary tract. Front Neurosci. 2012;6:130
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
05/14/2024
MGI 6.23 		The Jackson Laboratory