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MTF#5 Probe Detail
Nucleotide
Probe/Clone
  • Name
    MTF#5
  • Sequence Type
    cDNA
  • ID
    MGI:3505908
  • Region Covered
    Nucleotides 281-932 of GenBank Accession ID Y15741.
  • Vector Type
    Plasmid
  • Insert Site
    BamHI/HindIII
  • Insert Size
    0.651kb
  • Note
    The source of the material used to create this cDNA probe was different than that used to create the GenBank sequence record. Fragment was generated by PCR with primers CGCGGATCCGAACAGGATGCGAAGCCTAGGG and CCCAAGCTTACCAGTTCCAGGAGACCAGAGC. Template sequence provided by Paul Gray:
    AGGNAAANAANCNANNNANNCNNATCCANNTNNTNAANCNNNNTNTCCNAANTCCNNAGG
    GCCCCCCCTCGCAGGTCGACGGTATCGCATAAGCTTACCAGTTCCAGGAGACCAGAGCTG
    GTGGTGCTAAGTGCTGGTAGGCTGGGAAGAGGCCAANCGCCCGANCCCGGTCCGAAGGCG
    GTGTANCCTGGCACCGGCACACGCCACCTGGNCNGGCGTGCGCTGTACTTGTACCTGGNT
    GCACCNCNTAGGTCCNCTCNACTATGCCGTTGTTGATCNNTGGTCGGTNGAGATACCAAT
    NAANTNTTANNACTANCNCNGNAATTNNNGCTCATNGTAGNNNNNNNNAANATGAACATG
    TATGCCNNNCNGTATCCTNACCGCTGCGTNCTTCCCANNANGTNGACAGNNCCTTCTANT
    NCTNNNNANNNAGCAAGTCCNNAANACTGANNCNNNNTTTNANTCNGCCNGTTNANCTNA
    ANCCCCTTNCCATCATCTCCTGTTCCTTANCTNCTANNCNNCGNCTAGATTNNNNATNTN
    NCAGCNCTNTANAAACAAGTCNCCNANTCCACCNNNTNATACTTGCNTCATCGNCNATNN
    TNCCTNNCNNAATNTTTANCCCCCNCNCCNCNANCTTANAGATGNCNNNNANATACACNT
    CNNCCNCATTNACTNATACACCAATGCNNTANNNCTTTANATANAGCAATCTTTAGNACA
    ANNNCGCCCCNCTNAATCTNTCNNANNTNTACCATAANAAANANNANATNAAAAANCGCA
    NNNANNTTTNTTTGCTNTNACNGGTNAAAANTTTNNNNATGAATTTTNTTTTTANCTCCC
    CCNTNGTTCGTNTNNACNCNCCCCCCNGNNTNGNTCTNTTTNACTTTTNNNTCCACCTAA
    NAANAANTTNNATTATNTTCATNTCTTANTCCCNCCNTATATNNTCCGCCTCCTTATCAT
    GTCTNCATNCNTTTACACCCNTCNNACTNTNNCTATCCTNANTCNCATNTGNNNNNNNNT
    CNTANNCCNATCTANCCCGNTCCTNNTTCAACATNAGNTATANACACGAACTAACNAACG
    GTACNNTATTTNNTNCATNTTTNTNCATANNTNCACACTNTNTNGCNNAACCTCTACANT
    NCTCTGCACTCAGACCCNACACNATACGNTCNCNTANATTACTTNNTACACTNACTCANG
    CNNGGNTTGTCACNTATCGNNTANCCGCCCNCTNTTTNTTGAGGATCCCGCCNCACTANT
    TCTTCGCNACTGTGTNNCCCNACCNGTAGCGTACCTCACNNGGTGNANNCNTGNTGTCTA
    NANNCNGNACNGCCCCCCCATANCACACTACAATNGACTNCATANGANCCCCCGTATANN
    AGCTNATNAGAAGATNTGAACCAAANNAANNNCTNCATAAGACANNCNNNNNNACCCNGC
    GGNGCATAGCANNNNGCNTTAANNNGGCNNCCCCACCCNCCTNANCNCNGCGANCCCNTN
    TCGNNNGTCCTTTNNCNACGNNNCCAGGNNTTNTNATCTGNNNTNNTNNTACANNGTCCG
    NTTGCGAANNACATTANNATGGNNCCNNTTNTTATANTNNCCNACTNNTATANGGCCTNA
    GCGCCGNTNACAGNCCTGCNCTCCCAGNATTNTTTTGNTCGGNTGGGCCNNTCCTNNGNA
    TTNTNCTCTTCANATGTNTAANTNTACCCCACNAANCNATTN
  • Synonyms
    GUDMAP:5170 probe, maprobe:3
Source
  • Species
    mouse, laboratory
  • Strain
    C57BL
  • Age
    embryonic day 13.5
  • Tissue
    brain
Genes
Nkx2-9 NK2 homeobox 9
Expression
  • Assay Results
    54
Sequences
Y15741 (GenBank | EMBL | ENA | DDBJ | MGI Sequence Detail)
References
J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
J:168654 Chung YC, et al., Screening large numbers of expression patterns of transcription factors in late stages of the mouse thymus. Gene Expr Patterns. 2011 Jan-Feb;11(1-2):84-92
J:186535 Herriges JC, et al., Genome-scale study of transcription factor expression in the branching mouse lung. Dev Dyn. 2012 Sep;241(9):1432-53
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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05/07/2024
MGI 6.23 		The Jackson Laboratory