GO Annotations Graph
A
table of the annotations represented in this image is provided below.
- Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Black arrows indicate "regulates"; Green arrows indicate "positively_regulates"; Red arrows indicate "negatively_regulates"
- Experimental annotations are indicated by darker-colored nodes; other annotations by lighter-colored nodes
- Clicking on any node links to the MGI GO browser and information on all genes annotated to the term or its subterms.
- Graph generated Fri Mar 10 20:53:16 2023.
Category | GO ID | Classification Term | Evidence | Reference |
Cellular Component | GO:0005737 | cytoplasm | ISO | J:164563 |
Cellular Component | GO:0000408 | EKC/KEOPS complex | ISO | J:164563 |
Cellular Component | GO:0000408 | EKC/KEOPS complex | IBA | J:265628 |
Cellular Component | GO:0016604 | nuclear body | ISO | J:164563 |
Cellular Component | GO:0005654 | nucleoplasm | ISO | J:164563 |
Cellular Component | GO:0005634 | nucleus | ISO | J:164563 |
Biological Process | GO:0008033 | tRNA processing | IEA | J:60000 |
Biological Process | GO:0070525 | tRNA threonylcarbamoyladenosine metabolic process | IBA | J:265628 |
Gene Ontology Evidence Code Abbreviations:
Experimental:
- EXP
- Inferred from experiment
- HMP
- Inferred from high throughput mutant phenotype
- HGI
- Inferred from high throughput genetic interaction
- HDA
- Inferred from high throughput direct assay
- HEP
- Inferred from high throughput expression pattern
- IDA
- Inferred from direct assay
- IEP
- Inferred from expression pattern
- IGI
- Inferred from genetic interaction
- IMP
- Inferred from mutant phenotype
- IPI
- Inferred from physical interaction
Homology:
- IAS
- Inferred from ancestral sequence
- IBA
- Inferred from biological aspect of ancestor
- IBD
- Inferred from biological aspect of descendant
- IKR
- Inferred from key residues
- IMR
- Inferred from missing residues
- IRD
- Inferred from rapid divergence
- ISA
- Inferred from sequence alignment
- ISM
- Inferred from sequence model
- ISO
- Inferred from sequence orthology
- ISS
- Inferred from sequence or structural similarity
Automated:
- IEA
- Inferred from electronic annotation
- RCA
- Reviewed computational analysis
Other:
- IC
- Inferred by curator
- NAS
- Non-traceable author statement
- ND
- No biological data available
- TAS
- Traceable author statement