Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  2
• Reference
  J:38089 Pilz A, et al., High resolution genetic linkage analysis of mouse Chromosome 2 in the region of homology with human Chromosome 9. Mouse Genome. 1996;94(4):877-9
• ID
  MGI:48010

Genes

Gene	Assay Type	Description
Abl1	Southern analysis	Abl probe1
Ak1	Southern analysis	Ak1 probe1
Ass1	Southern analysis	Ass1 probe1
Abca2	Southern analysis	Abc2 probe1
Cel	Southern analysis	Cel cDNA1
Col5a1	Southern analysis	Col5a1 probe1
Hc	Southern analysis	Hc probe1
C8g	Southern analysis	C8g cDNA2
D2H9S10E	Southern analysis	D2H9S10E cDNA1
D2H9S114E	Southern analysis	D2H9S114E cDNA1
Nup214	Southern analysis	D2H9S46E cDNA1
Dbh	Southern analysis	Dbh probe1
Eng	Southern analysis	Eng cDNA2
Stom	Southern analysis	Epb7.2 probe1
Fpgs	Southern analysis	Fpgs probe2
Ggta1	Southern analysis	Ggta1 genomic1
Gsn	Southern analysis	Gsn probe1
Hspa5	Southern analysis	Grp78 probe1
Grin1	Southern analysis	Grin1 probe1
Notch1	Southern analysis	Notch1 probe2
Pbx3	Southern analysis	Pbx3 probe2
Ptgds	Southern analysis	Ptgds cDNA1
Rxra	Southern analysis	Rxra probe1
Sptan1	Southern analysis	Spna2 probe1
Surf1	Southern analysis	Surf1 probe1
Vav2	Southern analysis	Vav2 probe1
D2Mit6	reported elsewhere
D2Mit11	reported elsewhere

Notes

• Experiment
  Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, female
• Female Parent
  <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>/<s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s>
• Strain
  (C57BL/6J x SPR or SEG/Pas)F1
• Male Parent
  <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s>/<s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s>
• Strain
  SPR or SEG/Pas
• Mapping Panel
  EUCIB (BSS)
• Allele 1
  b from C57BL/6J
• Allele 2
  s from SPR or SEG/Pas

2x2 Data Reported

Marker 1	Marker 2	# Recombinants	# Parentals
D2Mit6	Grin1	12	845
Grin1	C8g	1	856
C8g	Abca2	1	856
Abca2	Ptgds	1	856
Ptgds	Notch1	14	843
Notch1	Vav2	1	856
Vav2	Dbh	1	856
Vav2	Surf1	1	856
Vav2	D2H9S10E	1	856
Dbh	D2H9S114E	3	854
Surf1	D2H9S114E	3	854
D2H9S10E	D2H9S114E	3	854
D2H9S114E	Rxra	1	856
D2H9S114E	Col5a1	1	856
Rxra	Cel	1	856
Col5a1	Cel	1	856
Cel	Sptan1	5	852
Sptan1	Ass1	3	854
Ass1	Nup214	1	856
Ass1	Abl1	1	856
C8g	Fpgs	1	856
Abl1	Fpgs	1	856
Fpgs	Eng	1	856
Eng	Ak1	1	856
Ak1	Ptgds	2	855
Pbx3	Hspa5	1	856
Hspa5	Hc	3	854
Hc	Stom	1	856
Stom	Gsn	3	854
Gsn	Ggta1	4	853
Ggta1	D2Mit11	137	740
D2Mit6	D2Mit11	199	658

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D2Mit6	Grin1	12	857	1.400	0.401
Grin1	C8g	1	857	0.117	0.117
C8g	Abca2	1	857	0.117	0.117
Abca2	Ptgds	1	857	0.117	0.117
Ptgds	Notch1	14	857	1.634	0.433
Notch1	Vav2	1	857	0.117	0.117
Vav2	Dbh	1	857	0.117	0.117
Vav2	Surf1	1	857	0.117	0.117
Vav2	D2H9S10E	1	857	0.117	0.117
Dbh	D2H9S114E	3	857	0.350	0.202
Surf1	D2H9S114E	3	857	0.350	0.202
D2H9S10E	D2H9S114E	3	857	0.350	0.202
D2H9S114E	Rxra	1	857	0.117	0.117
D2H9S114E	Col5a1	1	857	0.117	0.117
Rxra	Cel	1	857	0.117	0.117
Col5a1	Cel	1	857	0.117	0.117
Cel	Sptan1	5	857	0.583	0.260
Sptan1	Ass1	3	857	0.350	0.202
Ass1	Nup214	1	857	0.117	0.117
Ass1	Abl1	1	857	0.117	0.117
C8g	Fpgs	1	857	0.117	0.117
Abl1	Fpgs	1	857	0.117	0.117
Fpgs	Eng	1	857	0.117	0.117
Eng	Ak1	1	857	0.117	0.117
Ak1	Ptgds	2	857	0.233	0.165
Pbx3	Hspa5	1	857	0.117	0.117
Hspa5	Hc	3	857	0.350	0.202
Hc	Stom	1	857	0.117	0.117
Stom	Gsn	3	857	0.350	0.202
Gsn	Ggta1	4	857	0.467	0.233
Ggta1	D2Mit11	137	877	15.621	1.226
D2Mit6	D2Mit11	199	857	23.221	1.442