Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  2
• Reference
  J:14462 Zuberi AR, et al., High-resolution mapping of a minor histocompatibility antigen gene on mouse chromosome 2. Mamm Genome. 1993 Sep;4(9):516-22
• ID
  MGI:42542

Genes

Gene	Allele	Assay Type	Description
Hdc		Southern analysis	pCMV5
Mpmv28		Southern analysis	pMX17dp
D2Nds3		PCR amplified length variant
Tgm3		visible phenotype
Itpa		Southern analysis
D2Mit77		PCR amplified length variant	B738
Evi4		Southern analysis	pSE1.7
Pcna		Southern analysis	pCG4
Prnp		Southern analysis	p1.40
Chgb		Southern analysis	Scg-1 cDNA
Bmp2		Southern analysis	pBMP2-68
D2Mit70		PCR amplified length variant	B554
D2Mit19		PCR amplified length variant	A83
D2Mit46		PCR amplified length variant	A657
D2Mit28		PCR amplified length variant	D25
D2Ler1		Southern analysis	p3A9
H3b		immunological
Pax1	Pax1^un	visible phenotype

Notes

• Reference
  In the B10.UW x (CAST x B10.UW)F1 cross there was a preference in N2 mice for CAST alleles at we, un and A^w.

CROSS

• Type
  Backcross, male
• Female Parent
  <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>/<b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  B10.UW
• Male Parent
  <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>/<b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  (CAST x B10.UW)F1
• Allele 1
  b from B10.UW
• Allele 2
  c from CAST

2x2 Data Reported

Marker 1	Marker 2	# Recombinants	# Parentals
Hdc	Mpmv28	0	536
Mpmv28	D2Nds3	0	536
D2Nds3	Tgm3	0	536
Tgm3	Itpa	0	536
Itpa	D2Mit77	0	536
D2Mit77	Evi4	0	536
Evi4	Pcna	0	536
Pcna	Prnp	0	536
Prnp	Chgb	2	534
Chgb	Bmp2	0	536
Bmp2	D2Mit70	0	536
D2Mit70	D2Mit19	0	536
D2Mit19	D2Mit46	0	536
D2Mit46	D2Mit28	3	533
D2Mit28	D2Ler1	3	533
D2Ler1	H3b	2	534
H3b	Pax1	1	535

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Hdc	Mpmv28	0	536	0.000	0.000
Mpmv28	D2Nds3	0	536	0.000	0.000
D2Nds3	Tgm3	0	536	0.000	0.000
Tgm3	Itpa	0	536	0.000	0.000
Itpa	D2Mit77	0	536	0.000	0.000
D2Mit77	Evi4	0	536	0.000	0.000
Evi4	Pcna	0	536	0.000	0.000
Pcna	Prnp	0	536	0.000	0.000
Prnp	Chgb	2	536	0.373	0.263
Chgb	Bmp2	0	536	0.000	0.000
Bmp2	D2Mit70	0	536	0.000	0.000
D2Mit70	D2Mit19	0	536	0.000	0.000
D2Mit19	D2Mit46	0	536	0.000	0.000
D2Mit46	D2Mit28	3	536	0.560	0.322
D2Mit28	D2Ler1	3	536	0.560	0.322
D2Ler1	H3b	2	536	0.373	0.263
H3b	Pax1	1	536	0.187	0.186