Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  6
• Reference
  J:3321 Bahary N, et al., Molecular genetic linkage maps of mouse chromosomes 4 and 6. Genomics. 1991 Sep;11(1):33-47
• ID
  MGI:41872

Genes

Gene	Assay Type	Description
Col1a2	Southern analysis	Cola-2 probe
Tac1	Southern analysis	Tac1 probe
Met	Southern analysis	Met probe
Cpa1	Southern analysis	Cpa probe 1
Tcrb	Southern analysis	Tcrb probe
Npy	Southern analysis	Npy-5
Igk	Southern analysis	Igk probe
D6Rck132	Southern analysis	D6Rck132 probe
Rpl32	Southern analysis	Rpl32 probe
Prh1	Southern analysis	Prp probe
Kras	Southern analysis	Kras-2 probe 2

Notes

• Reference
  Revised gene symbols: Cga and Tac1 (formerly Tsha and Nkna respectively). Using a non-specific cDNA probe the authors determined that Acadm was mapped to Chr. 8. Later work has determined that the locus on Chr. 8 is really a pseudogene and it has been designated Acadm-ps2 (personal communication K. Johnson).
• Experiment
  Offspring types indicate alleles inherited from F1 parent.
  F1 direction known.
  

CROSS

• Type
  Backcross, female
• Female Parent
  <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>/<s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s>
• Strain
  (C57BL/6J x M. spretus)F1
• Male Parent
  <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>/<b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  C57BL/6J
• Allele 1
  b from C57BL/6J
• Allele 2
  s from M. spretus

CROSS Data

MC #mice	Col1a2	Tac1	Met	Cpa1	Tcrb	Npy	Igk	D6Rck132	Rpl32	Prh1	Kras
4	s	s	s	s	s	s	s	s	s	s	b
1	b	b	b	b	b	b	b	b	b	b	s
5	s	s	s	s	s	s	s	s	s	b	b
4	b	b	b	b	b	b	b	b	b	s	s
4	s	s	s	s	s	s	s	s	b	b	b
6	b	b	b	b	b	b	b	b	s	s	s
3	s	s	s	s	s	s	s	b	b	b	b
4	b	b	b	b	b	b	b	s	s	s	s
3	s	s	s	s	s	s	b	b	b	b	b
2	b	b	b	b	b	b	s	s	s	s	s
0	s	s	s	s	s	b	b	b	b	b	b
1	b	b	b	b	b	s	s	s	s	s	s
2	s	s	s	s	b	b	b	b	b	b	b
4	b	b	b	b	s	s	s	s	s	s	s
3	s	s	s	b	b	b	b	b	b	b	b
0	b	b	b	s	s	s	s	s	s	s	s
0	s	s	b	b	b	b	b	b	b	b	b
0	b	b	s	s	s	s	s	s	s	s	s
0	s	b	b	b	b	b	b	b	b	b	b
0	b	s	s	s	s	s	s	s	s	s	s
28	b	b	b	b	b	b	b	b	b	b	b
21	s	s	s	s	s	s	s	s	s	s	s
1	s	s	s	s	.	.	b	b	b	b	b
1	b	.	.	s	s	s	s	s	s	s	s
1	b	b	b	b	b	.	.	.	s	s	s
1	s	s	s	s	s	.	b	b	b	b	b
1	b	b	b	b	b	b	b	.	s	s	s
1	b	b	b	b	s	s	s	s	s	s	b
1	b	b	b	b	b	b	b	b	b	s	b
1	b	b	b	b	b	b	b	b	b	s	b
1	s	s	.	b	b	b	b	b	b	s	s
1	s	s	b	b	b	b	b	b	b	s	s
1	s	s	s	s	s	b	b	b	s	s	s
1	s	s	s	s	b	b	b	b	b	b	s
1	s	s	s	s	s	b	b	b	b	s	s
1	s	s	s	s	s	s	s	.	b	s	s
1	b	b	b	b	s	s	s	s	s	b	b

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Col1a2	Tac1	0	109	0.000	0.000
Tac1	Met	1	108	0.926	0.922
Met	Cpa1	3	108	2.778	1.581
Cpa1	Tcrb	9	109	8.257	2.636
Tcrb	Npy	3	107	2.804	1.596
Npy	Igk	5	107	4.673	2.040
Igk	D6Rck132	7	107	6.542	2.390
D6Rck132	Rpl32	11	107	10.280	2.936
Rpl32	Prh1	16	110	14.545	3.362
Prh1	Kras	9	110	8.182	2.613