Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  7
• Reference
  J:10993 Saunders AM, et al., A molecular genetic linkage map of mouse chromosome 7. Genomics. 1990 Nov;8(3):525-35
• ID
  MGI:40067

Genes

Gene	Assay Type	Description
Prkcg	Southern analysis	phPKC-(gamma)6
Apoe	Southern analysis	p2CL
Atp1a3	Southern analysis	pA1
Ckm	Southern analysis	pJN2CK-M
D7H19S19	Southern analysis	p17.4-4(2)
Ercc2	Southern analysis	pKER2
Xrcc1	Southern analysis	XP1-30
Pou2f2	Southern analysis	Puc-3-1
Cyp2a	Southern analysis	P450-IIA3
Cyp2b	Southern analysis	pP-450b-5
Rip	Southern analysis	pf3
Tgfb1	Southern analysis	pMUR(beta)2
D7H19F11S1	Southern analysis	OL5
Gpi1	Southern analysis	HS-10
Mag	Southern analysis	5Mag

Notes

• Reference
  This paper follows the Rip locus using a probe identifying Cyp2b10. Revised gene symbols: Atp1a3, Tgfb1, Snrp70, Snrp2a, Emv23, D7H19S19 and D7H19F11S1 (formerly Atpa-2, Tgfb, Rnu1p70, Rnu2pa, C58v-4, D19S19h and D19F11S1 respectively). Authors use Pkcg for Pkcc.

CROSS

• Type
  Backcross, female
• Female Parent
  <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>/<s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s>
• Strain
  (C3H/HeJ-Fasl x M. spretus)F1
• Male Parent
  <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>/<c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>
• Strain
  C3H/HeJ-Fasl/J
• Mapping Panel
  Seldin
• Allele 1
  c from C3H/HeJ-Fasl/J
• Allele 2
  s from M. spretus

CROSS Data

MC #mice	Prkcg	Apoe	Atp1a3	Ckm	D7H19S19	Ercc2	Xrcc1	Pou2f2	Cyp2a	Rip	Tgfb1	D7H19F11S1	Gpi1	Mag
78	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c
123	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
1	c	s	s	s	s	s	s	s	s	s	s	s	s	s	s
1	s	c	c	c	c	c	c	c	c	c	c	c	c	c	c
1	s	s	s	s	s	s	c	c	c	c	c	c	c	c	c
1	s	s	s	s	s	s	s	c	c	c	c	c	c	c	c
2	s	s	s	s	s	s	s	s	c	c	c	c	c	c	c
1	c	c	c	c	c	c	c	c	c	c	c	c	s	s	s
6	s	s	s	s	s	s	s	s	s	s	s	s	c	c	c
2	c	c	c	c	c	c	c	c	c	c	c	c	c	s	s
3	s	s	s	s	s	s	s	s	s	s	s	s	s	c	c

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Prkcg	Apoe	2	219	0.913	0.643
Apoe	Atp1a3	0	219	0.000	0.000
Atp1a3	Ckm	0	219	0.000	0.000
Ckm	D7H19S19	0	219	0.000	0.000
D7H19S19	Ercc2	0	219	0.000	0.000
Ercc2	Xrcc1	1	219	0.457	0.456
Xrcc1	Pou2f2	1	219	0.457	0.456
Pou2f2	Cyp2a	2	219	0.913	0.643
Rip	Tgfb1	0	219	0.000	0.000
Tgfb1	D7H19F11S1	7	219	3.196	1.189
D7H19F11S1	Gpi1	5	219	2.283	1.009
Gpi1	Mag	0	219	0.000	0.000