Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  2
• Reference
  J:9913 Siracusa LD, et al., Recombinant inbred strain and interspecific backcross analysis of molecular markers flanking the murine agouti coat color locus. Genetics. 1989 Jul;122(3):669-79
• ID
  MGI:39191

Genes

Gene	Assay Type	Description
B2m	Southern analysis	g2B2mdIIIB
Il1a	Southern analysis	pIL1-1301
Hck	Southern analysis	pHK24
Emv13	Southern analysis	pEmv-13 Sst probe
Bpifa2	Southern analysis	HhaI-Psp probe
a	reported elsewhere
Emv15	reported elsewhere
Src	Southern analysis	pN1.8
Ada	Southern analysis	pADA5-29
Svs5	Southern analysis	pSV-008
Pck1	Southern analysis	pPCK10

Notes

• Reference
  Revised gene symbols: Emv13, Hck and Lck (formerly Akv-3, Hck-1 and Hck-3 respectively).
• Experiment
  Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, female
• Female Parent
  <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>/<s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s>
• Strain
  (C57BL/6J x M. spretus)F1
• Male Parent
  <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>/<b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  C57BL/6J
• Mapping Panel
  Copeland-Jenkins
• Allele 1
  b from C57BL/6J
• Allele 2
  s from M. spretus

CROSS Data

MC #mice	B2m	Il1a	Hck	Emv13	Bpifa2	a	Emv15	Src	Ada	Svs5	Pck1
64	s	s	s	s	s	s	s	s	s	s	s
37	b	b	b	b	b	b	b	b	b	b	b
2	s	b	b	b	b	b	b	b	b	b	b
3	b	s	s	s	s	s	s	s	s	s	s
13	s	s	b	b	b	b	b	b	b	b	b
10	b	b	s	s	s	s	s	s	s	s	s
1	s	s	s	b	b	b	b	b	b	b	b
0	b	b	b	s	s	s	s	s	s	s	s
2	s	s	s	s	s	b	b	b	b	b	b
1	b	b	b	b	b	s	s	s	s	s	s
0	s	s	s	s	s	s	b	b	b	b	b
1	b	b	b	b	b	b	s	s	s	s	s
1	s	s	s	s	s	s	s	b	b	b	b
0	b	b	b	b	b	b	b	s	s	s	s
1	s	s	s	s	s	s	s	s	b	b	b
3	b	b	b	b	b	b	b	b	s	s	s
10	s	s	s	s	s	s	s	s	s	s	b
1	b	b	b	b	b	b	b	b	b	b	s

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
B2m	Il1a	5	150	3.333	1.466
Il1a	Hck	23	150	15.333	2.942
Hck	Emv13	1	150	0.667	0.664
Emv13	Bpifa2	0	150	0.000	0.000
Bpifa2	a	3	150	2.000	1.143
a	Emv15	1	150	0.667	0.664
Emv15	Src	1	150	0.667	0.664
Src	Ada	4	150	2.667	1.315
Ada	Svs5	0	150	0.000	0.000
Svs5	Pck1	11	150	7.333	2.128