Mapping Data

Experiment

• Experiment
  TEXT-Physical Mapping
• Chromosome
  5
• Reference
  J:66232 Wilsbacher LD, et al., The mouse clock locus: sequence and comparative analysis of 204 Kb from mouse chromosome 5. Genome Res. 2000 Dec;10(12):1928-40
• ID
  MGI:1930262

Genes

Gene	Assay Type
Nmu	overlapping clones, direct sequencing
D5Nwu2	overlapping clones, direct sequencing
Pdcl2	overlapping clones, direct sequencing
Clock	overlapping clones, direct sequencing
Ube2n-ps1	overlapping clones, direct sequencing
Tmem165	overlapping clones, direct sequencing
Apc-ps1	overlapping clones, direct sequencing
D5Nwu13	overlapping clones, direct sequencing
Srd5a3	overlapping clones, direct sequencing

Notes

• Experiment
  The authors constructed a physical map of the Clock locus on mouse Chromosome 5 using the BAC52, BAC54, BAC49 and YAC55. A shotgun sequencing approach was used to sequence a 204 kb region flanking the locus. The order and orientation of markers was: centromere - D5Mit307 - 5'- Srd5a2l - 3' - 5'- Tparl - 5' - Apc-ps1 - 3' - Tparl-3' - 3'- Clock - 3'- Ube2n-ps1 - 5' - Clock - 5' - 3'- Pdcl2 - 5' - D5Nwu2 - 3' - Nmu-5'. Additionally, there are two copies of the pseudogene Pafah1b1-ps2 integrated in the Nmu and Srd5a2l gene regions.