Mapping Data

Experiment

• Experiment
  TEXT-Physical Mapping
• Chromosome
  16
• Reference
  J:60871 Lund J, et al., Comparative sequence analysis of 634 kb of the mouse chromosome 16 region of conserved synteny with the human velocardiofacial syndrome region on chromosome 22q11.2. Genomics. 2000 Feb 1;63(3):374-83
• ID
  MGI:1858766

Genes

Gene	Assay Type
D16Jhu28	overlapping clones, direct sequencing
Hlcs	overlapping clones, direct sequencing
AA855340	overlapping clones, direct sequencing
AA546796	overlapping clones, direct sequencing
Klhl22	overlapping clones, direct sequencing
AU035318	overlapping clones, direct sequencing
Scarf2	overlapping clones, direct sequencing
Scarf2	overlapping clones, direct sequencing
Scarf2	overlapping clones, direct sequencing
D16Jhu35	overlapping clones, direct sequencing
D16Wis1	overlapping clones, direct sequencing
Car15	overlapping clones, direct sequencing
Dgcr2	overlapping clones, direct sequencing
D16Jhu25	overlapping clones, direct sequencing
Tssk1	overlapping clones, direct sequencing
Tssk2	overlapping clones, direct sequencing
Ess2	overlapping clones, direct sequencing
Gsc2	overlapping clones, direct sequencing
AA914427	overlapping clones, direct sequencing
Slc25a1	overlapping clones, direct sequencing
D16Jhu30	overlapping clones, direct sequencing
Vpreb1b	overlapping clones, direct sequencing
D16Jhu24	overlapping clones, direct sequencing
Gm49580	overlapping clones, direct sequencing
Dgcr6	overlapping clones, direct sequencing
Prodh	overlapping clones, direct sequencing
D16Mit143	overlapping clones, direct sequencing
20.MMHAP88FLG2.seq	overlapping clones, direct sequencing
Zdhhc8	overlapping clones, direct sequencing
Ranbp1	overlapping clones, direct sequencing
Trmt2a	overlapping clones, direct sequencing
Dgcr8	overlapping clones, direct sequencing
Tango2	overlapping clones, direct sequencing
9530053J19Rik	overlapping clones, direct sequencing
Arvcf	overlapping clones, direct sequencing
D16Jhu26
Comt	overlapping clones, direct sequencing
D16Jhu32	overlapping clones, direct sequencing
Txnrd2	overlapping clones, direct sequencing
Gnb1l	overlapping clones, direct sequencing
Tbx1	overlapping clones, direct sequencing
Gp1bb	overlapping clones, direct sequencing
Septin5	overlapping clones, direct sequencing
D16Jhu33	overlapping clones, direct sequencing
Cldn5	overlapping clones, direct sequencing
W77162	overlapping clones, direct sequencing
Cdc45	overlapping clones, direct sequencing
Ufd1	overlapping clones, direct sequencing
D630030B22Rik	overlapping clones, direct sequencing
9430099O15Rik	overlapping clones, direct sequencing
2510002D24Rik	overlapping clones, direct sequencing
D16Jhu27	overlapping clones, direct sequencing
Mrpl40	overlapping clones, direct sequencing
Hira	overlapping clones, direct sequencing
Hira	overlapping clones, direct sequencing
Iglc1	overlapping clones, direct sequencing
Zfp122-rs

Notes

• Experiment
  The authors equenced portions of a BAC/PAC contig on mouse Chromosome 16 that is part of the conserved synteny region of human Chromosome 22q11.2. Sequencing has been completed for 634kb of a 1.4 Mb region. Using comparative sequence analysis and algorithmic methods, the order and orientation of markers on mouse Chromosome 16 were determined to be: D16Jhu28 - D16Jhu34 - 5' - AA855340 - 3' - (5'- Klhl22 - 3', 5' - AA546796 - 3', 5' - L26697 - 3', 5' - AU035318 - 3') - 5' - Scarf1 - 3' - (3' W65560 - 5', 5'- W53987- 3') - D16Jhu35 - D16Wis1 - 3' - Cals2 - 5' - 3' - Dgcr2 - 5' - D16Jhu25 - 5' - Stk22a - 3' - 5' - Stk22b - 3' - 3' - Es2el - 5' - 3' - Gscl - 5' - 3' - AA914427 - 5' - 3' - Slc25a1 - 5' - D16Jhu30 - 5' - Vpreb2 - 3' - (5' - AA066038 - 3', D16Jhu24) - 5' - Dgcr6 - 3' - 3' - Prodh - 5' - D16Mit143 - 20.MMHAP88FLG2.seq - D16H22S1738E - 3' - Ranbp1 - 5' - 5' - Htf9c - 3' - 3' - Dgcr8 - 5' - 3' - D16H22S680E - 5' - 3' - AA562270 - 5' - 5' - Arvcf - 3' - D16Jhu26 - Comt - D16Jhu32 - AA118373 -Gnb1l - Tbx1 - Gp1bb - Pnutl1 - D16Jhu33 - Cldn5 - 3' - W77162 - 5' - 3' - Cdc45l - 5' - 5' - Ufd1l - 3' - 5' - AU042657 - 3' - 5' - AI050559 - 3' - 5' - AA920845 - 3' - 3' - AA163535 - 5' - D16Jhu27 - 3' - Mrpl40 - 5' - 5' - Hira - 3' - 5' - AA138857 -3' - Igl-C1. Zfp122-rs was present 20kb proximal to Cals2. Srec2 was located 12kb upstream of Zfp122-rs.