Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  1
• Reference
  J:52606 Eddleston J, et al., Physical and transcriptional map of a 3-Mb region of mouse chromosome 1 containing the gene for the neural tube defect mutant loop-tail (Lp). Genomics. 1999 Mar 1;56(2):149-59
• ID
  MGI:1334516

Genes

Gene	Assay Type	Description
D1Mit13
Vangl2	visible phenotype
Nhlh1	Southern analysis	Nhlh1-pC, Nhlh1-pD
Pex19	PCR amplified length variant	Pxf-pA, Pxf-pB
Copa	PCR amplified length variant	Copa-pC, Copa-pD
Crp
Fcer1g
Tagln2	Southern analysis	Tagln2-pA, Tagln2-pB
Or10j5	Southern analysis	Olfr16-pC, Olfr16-pD
D1Sta8	PCR amplified length variant	D1Sta8-pA, D1Sta8-pB
D1Sta7	PCR amplified length variant	D1Sta7-pA, D1Sta7-pB

CROSS

• Type
  Backcross, male
• Female Parent
  <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>
• Strain
  CBA/Ca
• Male Parent
  <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>/<l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l>
• Strain
  (CBA/Ca x LPT/Le)F1-Vangl2
• Allele 1
  c from CBA/Ca
• Allele 2
  c from LPT/LeJ

CROSS Data

MC #mice	D1Mit13	Vangl2	Nhlh1	Pex19	Copa	Crp	Fcer1g	Tagln2	Or10j5	D1Sta8	D1Sta7
745	l	l	l	l	l	l	l	l	l	l	l
8	c	l	l	l	l	l	l	l	l	l	l
1	l	l	l	l	l	c	c	c	c	c	c

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D1Mit13	Vangl2	8	754	1.061	0.373
Vangl2	Nhlh1	0	754	0.000	0.000
Nhlh1	Pex19	0	754	0.000	0.000
Pex19	Copa	0	754	0.000	0.000
Copa	Crp	1	754	0.133	0.133
Crp	Fcer1g	0	754	0.000	0.000
Fcer1g	Tagln2	0	754	0.000	0.000
Tagln2	Or10j5	0	754	0.000	0.000
Or10j5	D1Sta8	0	754	0.000	0.000
D1Sta8	D1Sta7	0	754	0.000	0.000