Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	PMF1	HGNC:9112 (HGNC) 11243 (Entrez Gene) 609176 (OMIM) PMF1 (Alliance of Genome Resources)	Chr1 q22	Chr1:156212993-156240042 (+) GRCh38	bladder carcinoma urinary bladder cancer	Q6P1K2 (UniProt | EBI) NM_007221 (RefSeq)
	PMF1-BGLAP	HGNC:42953 (HGNC) 100527963 (Entrez Gene) PMF1-BGLAP (Alliance of Genome Resources)	Chr1 q22	Chr1:156212982-156243332 (+) GRCh38		NP_001186591 (RefSeq) NM_001199661 (RefSeq)
mouse	Pmf1	MGI:1914287 (MGI) 67037 (Entrez Gene) Gene Tree Pmf1 (Alliance of Genome Resources)	Chr3 38.82 cM	Chr3:88301450-88317638 (-) GRCm39		ENSMUSG00000028066 (Ensembl Gene Model) ENSMUSP00000062420 (Ensembl) ENSMUST00000056370 (Ensembl)
rat	Pmf1	RGD:1584694 (Rat Genome Database) 681050 (Entrez Gene) Pmf1 (Alliance of Genome Resources)	Chr2 q34			NP_001178497 (RefSeq) NM_001191568 (RefSeq)
zebrafish	si:dkey-6i22.5	ZDB-GENE-050506-32 (Zebrafish Model Organism Database) 564240 (Entrez Gene) si:dkey-6i22.5 (Alliance of Genome Resources)	Chr14			NP_001373205 (RefSeq) NM_001386276 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.