Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes ZC3H4
  • Mouse genes Zc3h4
  • Rat genes Zc3h4
  • Zfish genes zc3h4
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Zc3h4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Zc3h4	IDA		Mouse	MGI:MGI:6867107|PMID:33767452
Molecular Function	GO:1990841	promoter-specific chromatin binding	ZC3H4	IDA		Human	PMID:33913806
Molecular Function	GO:0005515	protein binding	ZC3H4	IPI	UniProtKB:Q6UXN9	Human	PMID:33913806
Molecular Function	GO:0005515	protein binding	Zc3h4	IPI	UniProtKB:Q8BFQ4	Mouse	MGI:MGI:6867107|PMID:33767452
Molecular Function	GO:0003723	RNA binding	ZC3H4	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	ZC3H4	HDA		Human	PMID:22681889
Molecular Function	GO:0003723	RNA binding	ZC3H4	IDA		Human	PMID:33913806
Cellular Component	GO:0005829	cytosol	ZC3H4	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	ZC3H4	IDA		Human	GO_REF:0000052
Biological Process	GO:0110064	lncRNA catabolic process	ZC3H4	IDA		Human	PMID:33913806
Biological Process	GO:0110064	lncRNA catabolic process	Zc3h4	IDA		Mouse	MGI:MGI:6867107|PMID:33767452
Biological Process	GO:0032785	negative regulation of DNA-templated transcription, elongation	ZC3H4	IDA		Human	PMID:33913806
Biological Process	GO:0032785	negative regulation of DNA-templated transcription, elongation	Zc3h4	IDA		Mouse	MGI:MGI:6867107|PMID:33767452
Biological Process	GO:0140744	negative regulation of lncRNA transcription	ZC3H4	IDA		Human	PMID:33913806
Biological Process	GO:0140744	negative regulation of lncRNA transcription	Zc3h4	IDA		Mouse	MGI:MGI:6867107|PMID:33767452
Biological Process	GO:0071027	nuclear RNA surveillance	ZC3H4	IDA		Human	PMID:33913806
Biological Process	GO:0071027	nuclear RNA surveillance	Zc3h4	IDA		Mouse	MGI:MGI:6867107|PMID:33767452

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern