Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes WHAMM
  • Mouse genes Whamm
  • Rat genes Whamm
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Whamm

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0071933	Arp2/3 complex binding	WHAMM	IDA		Human	PMID:23087206
Molecular Function	GO:0008017	microtubule binding	WHAMM	IDA		Human	PMID:18614018
Molecular Function	GO:0031267	small GTPase binding	WHAMM	IDA		Human	PMID:23087206
Cellular Component	GO:0005829	cytosol	WHAMM	IDA		Human	GO_REF:0000052
Cellular Component	GO:0033116	endoplasmic reticulum-Golgi intermediate compartment membrane	WHAMM	IDA		Human	PMID:18614018
Cellular Component	GO:0000139	Golgi membrane	WHAMM	IDA		Human	PMID:18614018
Biological Process	GO:0007015	actin filament organization	WHAMM	IDA		Human	PMID:18614018
Biological Process	GO:0090527	actin filament reorganization	WHAMM	IMP		Human	PMID:23087206
Biological Process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	WHAMM	IDA		Human	PMID:18614018
Biological Process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	Whamm	IMP		Mouse	MGI:MGI:5582169|PMID:18614018
Biological Process	GO:0048041	focal adhesion assembly	WHAMM	IMP		Human	PMID:23087206
Biological Process	GO:0030032	lamellipodium assembly	WHAMM	IMP		Human	PMID:23087206
Biological Process	GO:0097320	plasma membrane tubulation	WHAMM	IDA		Human	PMID:18614018
Biological Process	GO:0051127	positive regulation of actin nucleation	WHAMM	IDA		Human	PMID:18614018

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern