Comparative GO Graph (mouse, human, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes UPK1A
  • Mouse genes Upk1a
  • Rat genes
  • Zfish genes upk1a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Upk1a

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	UPK1A	IPI	UniProtKB:P08191	Human	PMID:28228557
Molecular Function	GO:0005515	protein binding	UPK1A	IPI	UniProtKB:P35247	Human	PMID:28228557
Molecular Function	GO:0005515	protein binding	Upk1a	IPI	UniProtKB:P08191	Mouse	MGI:MGI:3688057|PMID:11739641
Cellular Component	GO:0016324	apical plasma membrane	Upk1a	IDA		Mouse	PMID:8175808
Cellular Component	GO:0120001	apical plasma membrane urothelial plaque	Upk1a	IDA		Mouse	PMID:22323295
Cellular Component	GO:0009986	cell surface	UPK1A	IDA		Human	PMID:28228557
Cellular Component	GO:0070062	extracellular exosome	UPK1A	HDA		Human	PMID:19056867
Cellular Component	GO:0016020	membrane	Upk1a	IDA		Mouse	MGI:MGI:3688057|PMID:11739641
Biological Process	GO:0030855	epithelial cell differentiation	UPK1A	IDA		Human	PMID:10514386

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern