Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes UPF3B
  • Mouse genes Upf3b
  • Rat genes Upf3b
  • Zfish genes upf3b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Upf3b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003729	mRNA binding	UPF3B	IDA		Human	PMID:11163187
Molecular Function	GO:0003729	mRNA binding	UPF3B	IDA		Human	PMID:11546873
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q92900	Human	PMID:11163187
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q9HAU5	Human	PMID:11163187
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q9Y5S9	Human	PMID:11546873
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q9Y5S9	Human	PMID:11546874
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q92900	Human	PMID:12417715
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q9HAU5	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:P38919	Human	PMID:15361857
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q92900	Human	PMID:15680326
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:P38919	Human	PMID:16209946
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:P61326	Human	PMID:16209946
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q9Y5S9	Human	PMID:16209946
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q9HAU5	Human	PMID:16452507
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q9Y5S9	Human	PMID:16452507
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:P38919	Human	PMID:16601204
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:P61326	Human	PMID:16601204
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q92900	Human	PMID:16601204
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q9HAU5	Human	PMID:16601204
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q9Y5S9	Human	PMID:16601204
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:P38919	Human	PMID:19410547
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:P61326	Human	PMID:19410547
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q92900	Human	PMID:19417104
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:P38919	Human	PMID:19478851
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:P61326	Human	PMID:19478851
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q92900	Human	PMID:19478851
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q9HAU5	Human	PMID:19503078
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q92900	Human	PMID:19864460
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q86US8	Human	PMID:20930030
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:P38919	Human	PMID:23084401
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q9Y5S9	Human	PMID:23084401
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:P17844	Human	PMID:23788676
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q14147	Human	PMID:25220460
Molecular Function	GO:0005515	protein binding	UPF3B	IPI	UniProtKB:Q9HAU5	Human	PMID:26496610
Molecular Function	GO:0005515	protein binding	upf3b	IPI	ZFIN:ZDB-GENE-040426-2082	Zfish	PMID:30944473
Molecular Function	GO:0003723	RNA binding	UPF3B	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	UPF3B	HDA		Human	PMID:22681889
Cellular Component	GO:0034451	centriolar satellite	UPF3B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	UPF3B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0035145	exon-exon junction complex	UPF3B	IDA		Human	PMID:11546873
Cellular Component	GO:0035145	exon-exon junction complex	UPF3B	IDA		Human	PMID:12718880
Cellular Component	GO:0035145	exon-exon junction complex	UPF3B	IDA		Human	PMID:16601204
Cellular Component	GO:0043025	neuronal cell body	Upf3b	IDA		Mouse	PMID:23821644
Cellular Component	GO:0005730	nucleolus	UPF3B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	UPF3B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	Upf3b	IDA		Mouse	PMID:23821644
Biological Process	GO:0007420	brain development	Upf3b	IMP		Mouse	PMID:23821644
Biological Process	GO:0031175	neuron projection development	Upf3b	IMP		Mouse	PMID:23821644
Biological Process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	UPF3B	IDA		Human	PMID:16601204
Biological Process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	UPF3B	IMP		Human	PMID:18369367
Biological Process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Upf3b	IDA		Mouse	PMID:23821644
Biological Process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Upf3b	IMP		Mouse	PMID:23821644
Biological Process	GO:0045666	positive regulation of neuron differentiation	Upf3b	IMP		Mouse	PMID:23821644
Biological Process	GO:0045727	positive regulation of translation	UPF3B	IDA		Human	PMID:16601204

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern