Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRNP1
  • Mouse genes Trnp1
  • Rat genes Trnp1
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trnp1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	Trnp1	IDA		Mouse	MGI:MGI:5490679|PMID:23622239
Molecular Function	GO:0005515	protein binding	Trnp1	IPI	UniProtKB:B9EKI3	Mouse	MGI:MGI:5488886|PMID:16792503
Cellular Component	GO:0000791	euchromatin	Trnp1	IDA		Mouse	MGI:MGI:5490679|PMID:23622239
Cellular Component	GO:0005634	nucleus	Trnp1	IDA		Mouse	MGI:MGI:5488886|PMID:16792503
Cellular Component	GO:0005634	nucleus	Trnp1	IDA		Mouse	MGI:MGI:5490679|PMID:23622239
Biological Process	GO:0021696	cerebellar cortex morphogenesis	Trnp1	IMP		Mouse	MGI:MGI:5490679|PMID:23622239
Biological Process	GO:0061351	neural precursor cell proliferation	Trnp1	IMP		Mouse	MGI:MGI:5490679|PMID:23622239
Biological Process	GO:0051726	regulation of cell cycle	Trnp1	IMP		Mouse	MGI:MGI:5488886|PMID:16792503
Biological Process	GO:0042127	regulation of cell population proliferation	Trnp1	IMP		Mouse	MGI:MGI:5488886|PMID:16792503

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern