Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRIM55
  • Mouse genes Trim55
  • Rat genes Trim55
  • Zfish genes trim55a,trim55b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trim55

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	TRIM55	IPI	UniProtKB:Q9BYV6	Human	PMID:22493164
Molecular Function	GO:0005515	protein binding	TRIM55	IPI	UniProtKB:P36406	Human	PMID:22493164
Molecular Function	GO:0005515	protein binding	TRIM55	IPI	UniProtKB:O95166	Human	PMID:25127057
Molecular Function	GO:0005515	protein binding	TRIM55	IPI	UniProtKB:Q13501	Human	PMID:25127057
Molecular Function	GO:0005515	protein binding	TRIM55	IPI	UniProtKB:Q9H492	Human	PMID:25127057
Molecular Function	GO:0005515	protein binding	TRIM55	IPI	UniProtKB:P36406	Human	PMID:31391242
Molecular Function	GO:0005515	protein binding	TRIM55	IPI	UniProtKB:Q92995	Human	PMID:31391242
Biological Process	GO:0050904	diapedesis	Trim55	IMP	MGI:MGI:3773035	Mouse	PMID:26452100
Biological Process	GO:0060047	heart contraction	trim55a	IMP	ZFIN:ZDB-CRISPR-200727-1,ZFIN:ZDB-CRISPR-200727-2,ZFIN:ZDB-CRISPR-200727-3	Zfish	PMID:31866377
Biological Process	GO:0032635	interleukin-6 production	Trim55	IDA		Mouse	PMID:29435413
Biological Process	GO:0002523	leukocyte migration involved in inflammatory response	Trim55	IMP	MGI:MGI:3773035	Mouse	PMID:26452100
Biological Process	GO:0010934	macrophage cytokine production	Trim55	IDA		Mouse	PMID:29435413
Biological Process	GO:1905517	macrophage migration	Trim55	IDA		Mouse	PMID:29435413

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern