Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRIM16,TRIM16L
  • Mouse genes Trim16
  • Rat genes Trim16
  • Zfish genes trim16
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trim16

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	TRIM16	IDA		Human	PMID:16636064
Molecular Function	GO:0019966	interleukin-1 binding	TRIM16	IPI	UniProtKB:P01584	Human	PMID:16575408
Molecular Function	GO:0032089	NACHT domain binding	TRIM16	IPI	UniProtKB:Q9C000	Human	PMID:16575408
Molecular Function	GO:0005515	protein binding	TRIM16	IPI	UniProtKB:P29466	Human	PMID:16575408
Molecular Function	GO:0005515	protein binding	TRIM16	IPI	UniProtKB:P08670	Human	PMID:20729920
Molecular Function	GO:0005515	protein binding	TRIM16	IPI	UniProtKB:Q01094	Human	PMID:20729920
Molecular Function	GO:0005515	protein binding	TRIM16	IPI	UniProtKB:Q9BSI4	Human	PMID:21044950
Molecular Function	GO:0005515	protein binding	TRIM16	IPI	UniProtKB:O95166	Human	PMID:25127057
Cellular Component	GO:0005737	cytoplasm	TRIM16	IDA		Human	PMID:11919186
Cellular Component	GO:0005737	cytoplasm	TRIM16	IDA		Human	PMID:16575408
Cellular Component	GO:0005737	cytoplasm	TRIM16	IDA		Human	PMID:9817599
Cellular Component	GO:0005737	cytoplasm	Trim16	IDA		Mouse	PMID:11919186
Cellular Component	GO:0005829	cytosol	TRIM16	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005886	plasma membrane	TRIM16	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016605	PML body	TRIM16	IDA		Human	PMID:16636064
Biological Process	GO:0043966	histone H3 acetylation	TRIM16	IDA		Human	PMID:19147277
Biological Process	GO:0043967	histone H4 acetylation	TRIM16	IDA		Human	PMID:16636064
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	TRIM16	IDA		Human	PMID:16636064
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	TRIM16	IDA		Human	PMID:19147277
Biological Process	GO:0032731	positive regulation of interleukin-1 beta production	TRIM16	IMP		Human	PMID:16575408
Biological Process	GO:0045618	positive regulation of keratinocyte differentiation	TRIM16	IDA		Human	PMID:11919186
Biological Process	GO:0048386	positive regulation of retinoic acid receptor signaling pathway	TRIM16	IDA		Human	PMID:16636064
Biological Process	GO:0060416	response to growth hormone	TRIM16	IDA		Human	PMID:11919186
Biological Process	GO:0046683	response to organophosphorus	TRIM16	IEP		Human	PMID:16079077
Biological Process	GO:0032526	response to retinoic acid	TRIM16	IEP		Human	PMID:16636064

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern