Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRDMT1
  • Mouse genes Trdmt1
  • Rat genes Trdmt1
  • Zfish genes trdmt1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trdmt1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0016428	tRNA (cytosine-5-)-methyltransferase activity	TRDMT1	EXP		Human	PMID:16424344
Molecular Function	GO:0016428	tRNA (cytosine-5-)-methyltransferase activity	TRDMT1	EXP		Human	PMID:18567810
Molecular Function	GO:0016428	tRNA (cytosine-5-)-methyltransferase activity	Trdmt1	IMP		Mouse	MGI:MGI:6194005|PMID:22885326
Molecular Function	GO:0008175	tRNA methyltransferase activity	TRDMT1	IDA		Human	PMID:16424344
Molecular Function	GO:0008175	tRNA methyltransferase activity	Trdmt1	IMP	MGI:MGI:3695409	Mouse	PMID:16424344
Cellular Component	GO:0005737	cytoplasm	TRDMT1	IDA		Human	PMID:16424344
Biological Process	GO:0001975	response to amphetamine	Trdmt1	IEP		Rat	PMID:15542706|RGD:2303196
Biological Process	GO:0030488	tRNA methylation	TRDMT1	IDA		Human	PMID:16424344
Biological Process	GO:0030488	tRNA methylation	Trdmt1	IMP		Mouse	MGI:MGI:6194005|PMID:22885326
Biological Process	GO:0030488	tRNA methylation	Trdmt1	IMP	MGI:MGI:3695409	Mouse	PMID:16424344
Biological Process	GO:0036416	tRNA stabilization	Trdmt1	IMP		Mouse	MGI:MGI:6194005|PMID:22885326

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern