Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRAPPC9
  • Mouse genes Trappc9
  • Rat genes Trappc9
  • Zfish genes si:dkey-218f9.10
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trappc9

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	TRAPPC9	IPI	UniProtKB:P0DI81,UniProtKB:P48553,UniProtKB:Q7Z392,UniProtKB:Q8WVT3,UniProtKB:Q9Y2L5	Human	PMID:21525244
Molecular Function	GO:0005515	protein binding	TRAPPC9	IPI	UniProtKB:P48553,UniProtKB:Q7Z392,UniProtKB:Q8WVT3,UniProtKB:Q9UL33,UniProtKB:Q9Y2L5	Human	PMID:21525244
Molecular Function	GO:0005515	protein binding	TRAPPC9	IPI	UniProtKB:Q9CQP2	Human	PMID:21858081
Molecular Function	GO:0005515	protein binding	Trappc9	IPI	PR:O88351	Mouse	PMID:24011459
Molecular Function	GO:0005515	protein binding	Trappc9	IPI	PR:O88351	Mouse	PMID:15951441
Molecular Function	GO:0005515	protein binding	Trappc9	IPI	RGD:621375	Rat	PMID:15951441|RGD:10045953
Cellular Component	GO:0005737	cytoplasm	Trappc9	IDA		Mouse	PMID:20004763
Cellular Component	GO:0030008	TRAPP complex	TRAPPC9	IDA		Human	PMID:21525244
Biological Process	GO:0021987	cerebral cortex development	TRAPPC9	IMP		Human	PMID:20004763
Biological Process	GO:0030182	neuron differentiation	Trappc9	IMP		Mouse	PMID:24011459
Biological Process	GO:0051092	positive regulation of NF-kappaB transcription factor activity	Trappc9	IMP		Mouse	PMID:24011459
Biological Process	GO:0051092	positive regulation of NF-kappaB transcription factor activity	Trappc9	IMP		Mouse	PMID:15951441

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern