Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRAFD1
  • Mouse genes Trafd1
  • Rat genes Trafd1
  • Zfish genes trafd1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trafd1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	TRAFD1	IPI	UniProtKB:P42858	Human	PMID:17500595
Molecular Function	GO:0005515	protein binding	TRAFD1	IPI	UniProtKB:P42858	Human	PMID:23275563
Molecular Function	GO:0005515	protein binding	TRAFD1	IPI	UniProtKB:Q96IV0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TRAFD1	IPI	UniProtKB:Q96IV0	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	TRAFD1	IPI	UniProtKB:Q96IV0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Trafd1	IPI	UniProtKB:P39428|UniProtKB:P39429|UniProtKB:P70196|UniProtKB:Q60803|UniProtKB:Q80UF7|UniProtKB:Q8VCF0	Mouse	MGI:MGI:3831253|PMID:18849341
Molecular Function	GO:0005515	protein binding	Trafd1	IPI	UniProtKB:P70196	Mouse	MGI:MGI:3773782|PMID:16221674
Biological Process	GO:0045824	negative regulation of innate immune response	Trafd1	IMP		Mouse	MGI:MGI:3831253|PMID:18849341
Biological Process	GO:0034097	response to cytokine	Trafd1	IEP		Rat	PMID:11748220|RGD:632653

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern