Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TNP1
  • Mouse genes Tnp1
  • Rat genes Tnp1
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tnp1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	TNP1	IMP		Human	PMID:12743712
Molecular Function	GO:0005515	protein binding	TNP1	IPI	UniProtKB:Q9H190	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TNP1	IPI	UniProtKB:Q9H190	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	TNP1	IPI	UniProtKB:Q92997	Human	PMID:32296183
Cellular Component	GO:0001673	male germ cell nucleus	Tnp1	IDA		Rat	PMID:2820847|RGD:729972
Cellular Component	GO:0000786	nucleosome	TNP1	IDA		Human	PMID:12743712
Cellular Component	GO:0000786	nucleosome	Tnp1	IDA		Mouse	MGI:MGI:5897488|PMID:28366643
Cellular Component	GO:0005634	nucleus	Tnp1	IDA		Mouse	MGI:MGI:3620321|PMID:15163613
Cellular Component	GO:0005634	nucleus	Tnp1	IDA		Mouse	PMID:17261847
Biological Process	GO:0006338	chromatin remodeling	TNP1	IDA		Human	PMID:12743712
Biological Process	GO:0030317	flagellated sperm motility	TNP1	IMP		Human	PMID:10781074
Biological Process	GO:0031507	heterochromatin formation	TNP1	IEP		Human	PMID:11315969
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	TNP1	IDA		Human	PMID:12743712
Biological Process	GO:0006337	nucleosome disassembly	TNP1	IMP		Human	PMID:10781074
Biological Process	GO:0010954	positive regulation of protein processing	Tnp1	IMP		Mouse	MGI:MGI:5897488|PMID:28366643
Biological Process	GO:0019953	sexual reproduction	TNP1	IMP		Human	PMID:10781074
Biological Process	GO:0000012	single strand break repair	TNP1	IDA		Human	PMID:12743712
Biological Process	GO:0035092	sperm DNA condensation	Tnp1	IMP		Mouse	MGI:MGI:3056208|PMID:15189834
Biological Process	GO:0035092	sperm DNA condensation	Tnp1	IMP		Mouse	MGI:MGI:3620321|PMID:15163613
Biological Process	GO:0035092	sperm DNA condensation	Tnp1	IMP		Mouse	MGI:MGI:5897488|PMID:28366643
Biological Process	GO:0035092	sperm DNA condensation	Tnp1	IMP		Mouse	MGI:MGI:3041389|PMID:15083521
Biological Process	GO:0007286	spermatid development	TNP1	IDA		Human	PMID:12743712
Biological Process	GO:0007290	spermatid nucleus elongation	TNP1	IMP		Human	PMID:10781074
Biological Process	GO:0007283	spermatogenesis	Tnp1	IMP	MGI:MGI:1859961	Mouse	PMID:10781074

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern