Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TNFSF13
  • Mouse genes Tnfsf13
  • Rat genes Tnfsf13
  • Zfish genes tnfsf13
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tnfsf13

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Cellular Component	GO:0009986	cell surface	tnfsf13	IDA		Zfish	PMID:22197036
Cellular Component	GO:0005737	cytoplasm	TNFSF13	IDA		Human	PMID:19828625
Cellular Component	GO:0009897	external side of plasma membrane	Tnfsf13	IDA		Mouse	PMID:14729948
Cellular Component	GO:0070062	extracellular exosome	TNFSF13	HDA		Human	PMID:19199708
Biological Process	GO:0002467	germinal center formation	Tnfsf13	IMP	MGI:MGI:3038886	Mouse	PMID:14988498
Biological Process	GO:0016064	immunoglobulin mediated immune response	Tnfsf13	IMP	MGI:MGI:3038886	Mouse	PMID:14988498
Biological Process	GO:0002426	immunoglobulin production in mucosal tissue	Tnfsf13	IMP	MGI:MGI:3038886	Mouse	PMID:14988498
Biological Process	GO:0002260	lymphocyte homeostasis	tnfsf13	IDA		Zfish	PMID:22197036
Biological Process	GO:0008284	positive regulation of cell population proliferation	Tnfsf13	IDA		Mouse	PMID:10973284
Biological Process	GO:0002636	positive regulation of germinal center formation	Tnfsf13	IMP	MGI:MGI:3038886	Mouse	PMID:14988498
Biological Process	GO:0048298	positive regulation of isotype switching to IgA isotypes	TNFSF13	IDA		Human	PMID:14988498
Biological Process	GO:0048298	positive regulation of isotype switching to IgA isotypes	Tnfsf13	IMP	MGI:MGI:3038886	Mouse	PMID:14988498
Biological Process	GO:0050776	regulation of immune response	Tnfsf13	IMP	MGI:MGI:3038886	Mouse	PMID:14988498

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern