Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes THSD1
  • Mouse genes Thsd1
  • Rat genes Thsd1
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Thsd1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0050840	extracellular matrix binding	THSD1	IMP		Human	PMID:27895300
Molecular Function	GO:0005515	protein binding	THSD1	IPI	UniProtKB:Q9Y490	Human	PMID:27895300
Cellular Component	GO:0071944	cell periphery	Thsd1	IDA		Mouse	PMID:16455951
Cellular Component	GO:0009986	cell surface	Thsd1	IDA		Mouse	PMID:16455951
Cellular Component	GO:0005737	cytoplasm	Thsd1	IDA		Mouse	PMID:16455951
Cellular Component	GO:0005829	cytosol	THSD1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005768	endosome	THSD1	IDA		Human	PMID:29069646
Cellular Component	GO:0005925	focal adhesion	THSD1	IMP		Human	PMID:27895300
Biological Process	GO:0048041	focal adhesion assembly	THSD1	IDA		Human	PMID:29069646
Biological Process	GO:0002244	hematopoietic progenitor cell differentiation	Thsd1	IGI	MGI:MGI:96601	Mouse	PMID:16455951

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern